Detail Information

Basic Information:


  VIRBase ID:  

VHID00562445

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B8-3p:           PHLDA3:      

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Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B8-3p PHLDA3
miRBase
Accession/Entrez ID		 MIMAT0031768 23612
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - TIH1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PHLDA3
chr1:201435758(-) A-I      intronic
chr1:201435752(-) A-I      intronic
chr1:201435852(-) A-I      intronic
chr1:201435696(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PHLDA3
chr1:201436349(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PHLDA3
chr1:201433868-201433869(-) m6A 3'UTR       24981863
chr1:201433888-201433889(-) m6A 3'UTR       24981863
chr1:201433915-201433916(-) m6A 3'UTR       24981863//22608085
chr1:201433925-201433926(-) m6A 3'UTR       24981863//22608085
chr1:201433951-201433952(-) m6A 3'UTR       24981863//22608085
chr1:201434203-201434204(-) m6A 3'UTR       24209618//24981863
chr1:201434789-201434790(-) m6A 3'UTR       24284625//25456834//24981863
chr1:201434865-201434866(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085
chr1:201435018-201435019(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr1:201435126-201435127(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr1:201435135-201435136(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr1:201435515-201435516(-) m6A exon//intron       24284625
chr1:201436628-201436629(-) m6A exon//intron       24209618
chr1:201437529-201437530(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773536
chr1:201437544-201437545(-) m6A CDS//exon       24284625//24981863//26404942//27773536
chr1:201437550-201437551(-) m6A CDS//exon       24284625//24981863//26404942//27773536
chr1:201437577-201437578(-) m6A CDS//exon       24284625//24981863//26404942//27773536
chr1:201437594-201437595(-) m6A CDS//exon       24284625//24981863//26404942//27773536
chr1:201437927-201437928(-) m6A 5'UTR       24284625//24209618//27371828//27773536//22575960
chr1:201438259-201438260(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr1:201438301-201438302(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PHLDA3
Exosome Blood     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B8-3p
Interactor2: PHLDA3

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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