Detail Information

Basic Information:


  VIRBase ID:  

VHID00557448

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B8-5p:           GIN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B8-5p GIN1
miRBase
Accession/Entrez ID		 MIMAT0031767 54826
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - GIN-1//TGIN1//ZH2C2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GIN1
chr5:102425311(-) A-I      intronic
chr5:102424331(-) A-I      intronic
chr5:102427643(-) A-I      intronic
chr5:102425971(-) A-I      intronic
chr5:102424245(-) A-I      intronic
chr5:102425931(-) A-I      intronic
chr5:102425321(-) A-I      intronic
chr5:102425836(-) A-I      intronic
chr5:102427456(-) A-I      intronic
chr5:102427472(-) A-I      intronic
chr5:102427546(-) A-I      intronic
chr5:102427585(-) A-I      intronic
chr5:102427634(-) A-I      intronic
chr5:102427642(-) A-I      intronic
chr5:102427646(-) A-I      intronic
chr5:102427758(-) A-I      intronic
chr5:102427889(-) A-I      intronic
chr5:102433852(-) A-I      intronic
chr5:102433874(-) A-I      intronic
chr5:102433858(-) A-I      intronic
chr5:102425907(-) A-I      intronic
chr5:102427982(-) A-I      intronic
chr5:102439569(-) A-I      intronic
chr5:102427939(-) A-I      intronic
chr5:102425893(-) A-I      intronic
chr5:102425263(-) A-I      intronic
chr5:102427915(-) A-I      intronic
chr5:102433857(-) A-I      intronic
chr5:102428478(-) A-I      intronic
chr5:102424305(-) A-I      intronic
chr5:102428447(-) A-I      intronic
chr5:102428391(-) A-I      intronic
chr5:102425223(-) A-I      intronic
chr5:102438359(-) A-I      ncRNA
chr5:102433684(-) A-I      intronic
chr5:102439755(-) A-I      intronic
chr5:102427905(-) A-I      intronic
chr5:102425894(-) A-I      intronic
chr5:102422788(-) A-I      3'UTR
chr5:102427911(-) A-I      intronic
chr5:102424240(-) A-I      intronic
chr5:102427798(-) A-I      intronic
chr5:102425245(-) A-I      intronic
chr5:102425226(-) A-I      intronic
chr5:102425906(-) A-I      intronic
chr5:102427859(-) A-I      intronic
chr5:102425869(-) A-I      intronic
chr5:102427832(-) A-I      intronic
chr5:102427710(-) A-I      intronic
chr5:102427845(-) A-I      intronic
chr5:102425250(-) A-I      intronic
chr5:102425325(-) A-I      intronic
chr5:102425930(-) A-I      intronic
chr5:102424350(-) A-I      intronic
chr5:102425191(-) A-I      intronic
chr5:102425301(-) A-I      intronic
chr5:102427824(-) A-I      intronic
chr5:102427998(-) A-I      intronic
chr5:102425276(-) A-I      intronic
chr5:102427770(-) A-I      intronic
chr5:102433762(-) A-I      intronic
chr5:102427928(-) A-I      intronic
chr5:102427865(-) A-I      intronic
chr5:102427605(-) A-I      intronic
chr5:102433683(-) A-I      intronic
chr5:102438436(-) A-I      ncRNA
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GIN1
chr5:102425223(-) A-I intron -    22327324
chr5:102425301(-) A-I intron -    22327324
chr5:102425263(-) A-G intron -    22484847
chr5:102425301(-) A-G intron -    22484847
chr5:102425869(-) A-G intron -    22484847
chr5:102425893(-) A-G intron -    22484847
chr5:102425906(-) A-G intron -    22484847
chr5:102427617(-) A-G intron -    22484847
chr5:102427911(-) A-G intron -    22484847
chr5:102438443(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GIN1
chr5:102421728-102421729(-) m6A 3'UTR       27773535
chr5:102421736-102421737(-) m6A 3'UTR       27773535
chr5:102421751-102421752(-) m6A 3'UTR       27773535
chr5:102421778-102421779(-) m6A 3'UTR       27773535
chr5:102421833-102421834(-) m6A 3'UTR       27773535
chr5:102423626-102423627(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr5:102423635-102423636(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr5:102423651-102423652(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr5:102423708-102423709(-) Y 3'UTR//CDS//exon       26075521
chr5:102423718-102423719(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr5:102432248-102432249(-) m6A 3'UTR//CDS//intron       24284625//27773535//22608085
chr5:102432296-102432297(-) m6A 3'UTR//CDS//intron       24284625//27773535//22608085
chr5:102432305-102432306(-) m6A 3'UTR//CDS//intron       24284625//27773535//22608085
chr5:102432321-102432322(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr5:102432357-102432358(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr5:102432422-102432423(-) m6A 3'UTR//CDS//intron       24981863//27773535
chr5:102432467-102432468(-) m6A 3'UTR//CDS//intron       27773535
chr5:102432473-102432474(-) m6A 3'UTR//CDS//intron       27773535
chr5:102432506-102432507(-) m6A 3'UTR//CDS//intron       27773535
chr5:102432522-102432523(-) m6A 3'UTR//CDS//intron       27773535
chr5:102433034-102433035(-) m6A 3'UTR//CDS//intron       27773535
chr5:102444350-102444351(-) m6A CDS//exon       27773535
chr5:102444372-102444373(-) m6A CDS//exon       24981863//27773535
chr5:102455775-102455776(-) m6A 5'UTR//exon       24981863//27773535
chr5:102455849-102455850(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GIN1
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B8-5p
Interactor2: GIN1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid
Support Database VmiReg

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