Detail Information

Basic Information:


  VIRBase ID:  

VHID00552069

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B7-5p:           UCK1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B7-5p UCK1
miRBase
Accession/Entrez ID		 MIMAT0031766 83549
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - URK1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR UCK1
chr9:134401062(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED UCK1
chr9:134399999(-) C-T exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase UCK1
chr9:134399200-134399201(-) m6A 3'UTR       27773535
chr9:134400085-134400086(-) m6A 3'UTR       -
chr9:134400094-134400095(-) m6A 3'UTR       -
chr9:134400245-134400246(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:134400260-134400261(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:134400279-134400280(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:134400374-134400375(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:134400435-134400436(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:134400490-134400491(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:134400509-134400510(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:134400574-134400575(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828
chr9:134401323-134401324(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828
chr9:134401363-134401364(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr9:134401386-134401387(-) m6A exon//intron       24284625//27773535
chr9:134404274-134404275(-) m6A exon//intron       -
chr9:134404283-134404284(-) m6A exon//intron       -
chr9:134404397-134404398(-) m6A CDS//exon//intron       24284625//27773535//27773536
chr9:134404573-134404574(-) m6A CDS//exon       27773535
chr9:134404646-134404647(-) m6A CDS//exon       27773535
chr9:134404931-134404932(-) m6A CDS//exon       24981863//27773535
chr9:134404941-134404942(-) m6A CDS//exon       24981863//27773535
chr9:134405894-134405895(-) m6A CDS//exon       24209618//24981863//27773535//27371828
chr9:134405946-134405947(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536
chr9:134405981-134405982(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536
chr9:134405996-134405997(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536
chr9:134406538-134406539(-) m6A CDS//exon       24209618//27371828//27773536
chr9:134406587-134406588(-) m6A 5'UTR//exon       24209618//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate UCK1
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B7-5p
Interactor2: UCK1

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

Starting a new search, please wait ...