Detail Information

Basic Information:


  VIRBase ID:  

VHID00549908

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B7-5p:           ATG12:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B7-5p ATG12
miRBase
Accession/Entrez ID		 MIMAT0031766 9140
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - APG12//APG12L//FBR93//HAPG12

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ATG12
chr5:115176198(-) A-I      ncRNA
chr5:115176173(-) A-I      intronic
chr5:115176127(-) A-I      intronic
chr5:115174733(-) A-I      ncRNA
chr5:115174653(-) A-I      ncRNA
chr5:115174757(-) A-I      ncRNA
chr5:115176092(-) A-I      intronic
chr5:115176268(-) A-I      ncRNA
chr5:115176159(-) A-I      intronic
chr5:115174529(-) A-I      ncRNA
chr5:115176267(-) A-I      ncRNA
chr5:115176174(-) A-I      intronic
chr5:115165563(-) A-I      3'UTR
chr5:115166355(-) A-I      3'UTR
chr5:115166495(-) A-I      3'UTR
chr5:115166318(-) A-I      3'UTR
chr5:115166323(-) A-I      3'UTR
chr5:115165665(-) A-I      3'UTR
chr5:115165767(-) A-I      3'UTR
chr5:115166282(-) A-I      3'UTR
chr5:115165731(-) A-I      3'UTR
chr5:115166251(-) A-I      3'UTR
chr5:115165591(-) A-I      3'UTR
chr5:115166471(-) A-I      3'UTR
chr5:115165632(-) A-I      3'UTR
chr5:115166300(-) A-I      3'UTR
chr5:115176123(-) A-I      intronic
chr5:115176165(-) A-I      intronic
chr5:115176103(-) A-I      intronic
chr5:115176133(-) A-I      intronic
chr5:115176022(-) A-I      intronic
chr5:115176132(-) A-I      intronic
chr5:115176091(-) A-I      intronic
chr5:115174720(-) A-I      ncRNA
chr5:115174806(-) A-I      ncRNA
chr5:115174703(-) A-I      ncRNA
chr5:115174711(-) A-I      ncRNA
chr5:115174649(-) A-I      ncRNA
chr5:115174708(-) A-I      ncRNA
chr5:115174712(-) A-I      ncRNA
chr5:115174569(-) A-I      ncRNA
chr5:115174737(-) A-I      ncRNA
chr5:115174774(-) A-I      ncRNA
chr5:115174656(-) A-I      ncRNA
chr5:115174639(-) A-I      ncRNA
chr5:115174688(-) A-I      ncRNA
chr5:115174738(-) A-I      ncRNA
chr5:115174542(-) A-I      ncRNA
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ATG12
chr5:115174481(-) A-I intron -    15342557
chr5:115174529(-) A-I intron -    15342557
chr5:115174568(-) A-I intron -    15342557   //22327324
chr5:115174639(-) A-I intron -    15342557
chr5:115174649(-) A-I intron -    15342557
chr5:115174653(-) A-I intron -    15342557   //22327324
chr5:115174698(-) A-I intron -    15342557
chr5:115174703(-) A-I intron -    15342557
chr5:115174708(-) A-I intron -    15342557
chr5:115174712(-) A-I intron -    15342557
chr5:115174720(-) A-I intron -    15342557
chr5:115174738(-) A-I intron -    15342557
chr5:115174757(-) A-I intron -    15342557
chr5:115174774(-) A-I intron -    15342557
chr5:115165632(-) A-I exon 3'UTR    22327324
chr5:115176132(-) A-I intron -    22327324
chr5:115176133(-) A-I intron -    22327324
chr5:115165591(-) A-G exon 3'UTR    21725310   //22484847
chr5:115165731(-) A-G exon 3'UTR    21725310   //22484847
chr5:115165548(-) G-A exon 3'UTR    22484847
chr5:115165563(-) A-G exon 3'UTR    22484847
chr5:115165632(-) A-G exon 3'UTR    22484847
chr5:115166251(-) A-G exon 3'UTR    22484847
chr5:115166252(-) G-A exon 3'UTR    22484847
chr5:115166379(-) T-A exon 3'UTR    22484847
chr5:115166486(-) A-G exon 3'UTR    22484847
chr5:115174529(-) A-G intron -    22484847
chr5:115174568(-) A-G intron -    22484847
chr5:115174569(-) A-G intron -    22484847
chr5:115174639(-) A-G intron -    22484847
chr5:115174708(-) A-G intron -    22484847
chr5:115174712(-) A-G intron -    22484847
chr5:115176132(-) A-G intron -    22484847
chr5:115176133(-) A-G intron -    22484847
chr5:115176163(-) A-G intron -    22484847
chr5:115176190(-) A-G intron -    22484847
chr5:115176191(-) A-G intron -    22484847
chr5:115176267(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ATG12
chr5:115163900-115163901(-) m6A 3'UTR       27773535
chr5:115163990-115163991(-) m6A 3'UTR       27773535
chr5:115164010-115164011(-) m6A 3'UTR       27773535
chr5:115164142-115164143(-) m6A 3'UTR       27773535
chr5:115164173-115164174(-) m6A 3'UTR       27773535
chr5:115164182-115164183(-) m6A 3'UTR       27773535
chr5:115164189-115164190(-) m6A 3'UTR       27773535
chr5:115164234-115164235(-) m6A 3'UTR       27773535
chr5:115164558-115164559(-) m6A 3'UTR       27773535
chr5:115164571-115164572(-) m6A 3'UTR       27773535
chr5:115166199-115166200(-) m6A 3'UTR//exon       24981863
chr5:115166267-115166268(-) m6A 3'UTR//exon       24981863
chr5:115166836-115166837(-) m6A 3'UTR//exon       26404942
chr5:115166903-115166904(-) m6A 3'UTR//exon       -
chr5:115166915-115166916(-) m6A 3'UTR//exon       -
chr5:115167199-115167200(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr5:115167208-115167209(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr5:115167214-115167215(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr5:115167337-115167338(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr5:115167356-115167357(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr5:115167412-115167413(-) m6A 3'UTR//exon       24284625//24981863//22608085
chr5:115167447-115167448(-) m6A 3'UTR//exon       24284625//24981863//22608085
chr5:115167499-115167500(-) m6A 3'UTR//exon       24981863//22608085
chr5:115167539-115167540(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr5:115169894-115169895(-) m6A exon//intron       27773535
chr5:115170645-115170646(-) m6A exon//intron       27773535//22608085
chr5:115170659-115170660(-) m6A exon//intron       27773535//22608085
chr5:115170678-115170679(-) m6A exon//intron       27773535//22608085
chr5:115170743-115170744(-) m6A exon//intron       27773535//22608085
chr5:115170749-115170750(-) m6A exon//intron       27773535//22608085
chr5:115170764-115170765(-) m6A exon//intron       27773535//22608085
chr5:115170825-115170826(-) m6A exon//intron       27773535//22608085
chr5:115173330-115173331(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535//22608085
chr5:115173345-115173346(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535//22608085
chr5:115173375-115173376(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535//22608085
chr5:115173386-115173387(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//27773535
chr5:115173392-115173393(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//27773535
chr5:115173416-115173417(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//27773535
chr5:115173433-115173434(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//27773535
chr5:115176981-115176982(-) m6A 3'UTR//intron       27773535
chr5:115177111-115177112(-) m6A CDS//exon       24284625//24981863//27773535//27371828
chr5:115177119-115177120(-) m6A CDS//exon       24284625//24981863//27773535//27371828
chr5:115177164-115177165(-) m6A CDS//exon       24284625//24981863//27773535//27371828
chr5:115177186-115177187(-) m6A CDS//exon       24284625//24981863//27773535//27371828
chr5:115177375-115177376(-) m6A 5'UTR       24981863//27773535
chr5:115177439-115177440(-) m6A 5'UTR       24981863//27773535
chr5:115177485-115177486(-) m6A 5'UTR       24981863//27773535
chr5:115177543-115177544(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ATG12
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B7-5p
Interactor2: ATG12

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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