Basic Information:

  VIRBase ID:  

VHID00545677

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B3RC-3p:  MIMAT0031765          LDB1:  NM_001321612     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B3RC-3p	LDB1
miRBase Accession/Entrez ID	MIMAT0031765	8861
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CLIM-2//CLIM2//LDB-1//NLI

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LDB1	chr10:103871486(-) A-I      intronic chr10:103876103(-) A-I      intronic chr10:103876076(-) A-I      intronic chr10:103876205(-) A-I      intronic chr10:103871348(-) A-I      intronic chr10:103875986(-) A-I      intronic chr10:103871508(-) A-I      intronic chr10:103871499(-) A-I      intronic chr10:103876067(-) A-I      intronic chr10:103871496(-) A-I      intronic chr10:103871525(-) A-I      intronic chr10:103871354(-) A-I      intronic chr10:103871425(-) A-I      intronic chr10:103876211(-) A-I      intronic chr10:103871442(-) A-I      intronic chr10:103871594(-) A-I      intronic chr10:103876063(-) A-I      intronic chr10:103871500(-) A-I      intronic chr10:103871602(-) A-I      intronic chr10:103876077(-) A-I      intronic chr10:103871440(-) A-I      intronic chr10:103875981(-) A-I      intronic chr10:103867832(-) A-I      3'UTR chr10:103879093(-) A-I      intronic chr10:103872481(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LDB1	chr10:103876063(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LDB1	chr10:103867468-103867469(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr10:103867588-103867589(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:103867603-103867604(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:103867713-103867714(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:103867718-103867719(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:103867766-103867767(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr10:103867779-103867780(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr10:103867874-103867875(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:103867913-103867914(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:103867958-103867959(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:103867997-103867998(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr10:103869182-103869183(-) m6A CDS       24284625//27773535//27371828 chr10:103869215-103869216(-) m6A CDS       24284625//27773535//27371828 chr10:103869402-103869403(-) m6A CDS       24284625//27773535 chr10:103869432-103869433(-) m6A CDS       24284625//27773535 chr10:103874220-103874221(-) m6A 5'UTR//intron       24284625//27773536 chr10:103874268-103874269(-) m6A 5'UTR//intron       24284625//27371828//27773536 chr10:103874306-103874307(-) m6A 5'UTR//intron       27371828//27773536 chr10:103874365-103874366(-) m6A 5'UTR//intron       24209618//25456834//27371828//27773536 chr10:103874447-103874448(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828//27773536 chr10:103874463-103874464(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828//27773536 chr10:103874472-103874473(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828//27773536 chr10:103880111-103880112(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr10:103880126-103880127(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr10:103880162-103880163(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LDB1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B3RC-3p
Interactor2: LDB1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg