Basic Information:

  VIRBase ID:  

VHID00543414

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B3RC-5p:  MIMAT0031764          SLC39A10:  NM_001127257     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B3RC-5p	SLC39A10
miRBase Accession/Entrez ID	MIMAT0031764	57181
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LZT-Hs2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC39A10	chr2:196527233(+) A-I      intronic chr2:196533521(+) A-I      intronic chr2:196539131(+) A-I      intronic chr2:196537075(+) A-I      intronic chr2:196527200(+) A-I      intronic chr2:196536958(+) A-I      intronic chr2:196529657(+) A-I      intronic chr2:196534629(+) A-I      intronic chr2:196533597(+) A-I      intronic chr2:196531324(+) A-I      intronic chr2:196531312(+) A-I      intronic chr2:196529947(+) A-I      intronic chr2:196529792(+) A-I      intronic chr2:196536934(+) A-I      intronic chr2:196534729(+) A-I      intronic chr2:196529697(+) A-I      intronic chr2:196531300(+) A-I      intronic chr2:196529645(+) A-I      intronic chr2:196529660(+) A-I      intronic chr2:196542079(+) A-I      intronic chr2:196531308(+) A-I      intronic chr2:196531395(+) A-I      intronic chr2:196531421(+) A-I      intronic chr2:196533625(+) A-I      intronic chr2:196533692(+) A-I      intronic chr2:196533705(+) A-I      intronic chr2:196534721(+) A-I      intronic chr2:196534730(+) A-I      intronic chr2:196534824(+) A-I      intronic chr2:196534733(+) A-I      intronic chr2:196536959(+) A-I      intronic chr2:196534789(+) A-I      intronic chr2:196534804(+) A-I      intronic chr2:196527020(+) A-I      intronic chr2:196527156(+) A-I      intronic chr2:196538013(+) A-I      intronic chr2:196540418(+) A-I      intronic chr2:196542093(+) A-I      intronic chr2:196542105(+) A-I      intronic chr2:196568421(+) A-I      intronic chr2:196568631(+) A-I      intronic chr2:196538086(+) A-I      intronic chr2:196531233(+) A-I      intronic chr2:196533557(+) A-I      intronic chr2:196527147(+) A-I      intronic chr2:196542554(+) A-I      intronic chr2:196534460(+) A-I      intronic chr2:196534630(+) A-I      intronic chr2:196542107(+) A-I      intronic chr2:196542153(+) A-I      intronic chr2:196531257(+) A-I      intronic chr2:196531460(+) A-I      intronic chr2:196578790(+) A-I      intronic chr2:196537137(+) A-I      intronic chr2:196537052(+) A-I      intronic chr2:196537044(+) A-I      intronic chr2:196542746(+) A-I      intronic chr2:196536984(+) A-I      intronic chr2:196542108(+) A-I      intronic chr2:196527189(+) A-I      intronic chr2:196526186(+) A-I      intronic chr2:196527023(+) A-I      intronic chr2:196554736(+) A-I      intronic chr2:196540229(+) A-I      intronic chr2:196566429(+) A-I      intronic chr2:196578840(+) A-I      intronic chr2:196526182(+) A-I      intronic chr2:196542006(+) A-I      intronic chr2:196534762(+) A-I      intronic chr2:196536874(+) A-I      intronic chr2:196542168(+) A-I      intronic chr2:196533679(+) A-I      intronic chr2:196554700(+) A-I      intronic chr2:196531447(+) A-I      intronic chr2:196530081(+) A-I      intronic chr2:196542734(+) A-I      intronic chr2:196540234(+) A-I      intronic chr2:196531448(+) A-I      intronic chr2:196531283(+) A-I      intronic chr2:196538119(+) A-I      intronic chr2:196536980(+) A-I      intronic chr2:196527132(+) A-I      intronic chr2:196537045(+) A-I      intronic chr2:196537027(+) A-I      intronic chr2:196536967(+) A-I      intronic chr2:196529725(+) A-I      intronic chr2:196530087(+) A-I      intronic chr2:196531322(+) A-I      intronic chr2:196534541(+) A-I      intronic chr2:196538000(+) A-I      intronic chr2:196566437(+) A-I      intronic chr2:196539102(+) A-I      intronic chr2:196539141(+) A-I      intronic chr2:196538144(+) A-I      intronic chr2:196529651(+) A-I      intronic chr2:196529888(+) A-I      intronic chr2:196534682(+) A-I      intronic chr2:196529793(+) A-I      intronic chr2:196554832(+) A-I      intronic chr2:196537995(+) A-I      intronic chr2:196529962(+) A-I      intronic chr2:196529698(+) A-I      intronic chr2:196534736(+) A-I      intronic chr2:196580157(+) A-I      intronic chr2:196531348(+) A-I      intronic chr2:196554739(+) A-I      intronic chr2:196593747(+) A-I      intronic chr2:196554822(+) A-I      intronic chr2:196542159(+) A-I      intronic chr2:196542097(+) A-I      intronic chr2:196530061(+) A-I      intronic chr2:196536981(+) A-I      intronic chr2:196527209(+) A-I      intronic chr2:196542693(+) A-I      intronic chr2:196536996(+) A-I      intronic chr2:196536972(+) A-I      intronic chr2:196531295(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC39A10	chr2:196536874(+) A-G intron -    22484847 chr2:196536984(+) A-G intron -    22484847 chr2:196536996(+) A-G intron -    22484847 chr2:196537027(+) A-G intron -    22484847 chr2:196537045(+) A-G intron -    22484847 chr2:196542006(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC39A10	chr2:196521657-196521658(+) m6A 5'UTR//intron       - chr2:196521676-196521677(+) m6A 5'UTR//intron       - chr2:196521694-196521695(+) m6A 5'UTR//intron       - chr2:196521857-196521858(+) m6A 5'UTR//intron       22575960 chr2:196536439-196536440(+) m6A 5'UTR//intron       24284625//24209618//22608085 chr2:196544849-196544850(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr2:196544879-196544880(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr2:196544963-196544964(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22575960//22608085 chr2:196545017-196545018(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22575960//22608085 chr2:196545028-196545029(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22575960//22608085 chr2:196545186-196545187(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545214-196545215(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545240-196545241(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545272-196545273(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545401-196545402(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545414-196545415(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545423-196545424(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545431-196545432(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545446-196545447(+) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr2:196545542-196545543(+) m6A CDS//exon//intron       24284625//24209618//24981863//22575960//22608085 chr2:196545569-196545570(+) m6A CDS//exon//intron       24284625//24209618//24981863//22575960//22608085 chr2:196545644-196545645(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr2:196545677-196545678(+) m6A CDS//exon       24284625//24981863//22575960//22608085 chr2:196573486-196573487(+) m6A 3'UTR//CDS//exon       22575960 chr2:196573528-196573529(+) m6A 3'UTR//CDS//exon       22575960 chr2:196573558-196573559(+) m6A 3'UTR//CDS//exon       24981863//22575960 chr2:196578161-196578162(+) m6A 3'UTR//CDS//exon       24981863//22575960 chr2:196578179-196578180(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr2:196578184-196578185(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr2:196578232-196578233(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr2:196581362-196581363(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr2:196581401-196581402(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr2:196581406-196581407(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr2:196581411-196581412(+) Cm 3'UTR//CDS//exon       - chr2:196581480-196581481(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr2:196581558-196581559(+) m6A 3'UTR//CDS//exon       24284625//22608085 chr2:196581563-196581564(+) m6A 3'UTR//CDS//exon       24284625//22608085 chr2:196599990-196599991(+) m6A 3'UTR       24981863//22608085 chr2:196599999-196600000(+) m6A 3'UTR       24981863//22608085 chr2:196600024-196600025(+) m6A 3'UTR       24981863//22608085 chr2:196600049-196600050(+) m6A 3'UTR       24981863//22608085 chr2:196600073-196600074(+) m6A 3'UTR       24981863//22608085 chr2:196600104-196600105(+) m6A 3'UTR       24981863//22608085 chr2:196600123-196600124(+) m6A 3'UTR       24981863//22608085 chr2:196600145-196600146(+) m6A 3'UTR       24981863//22608085 chr2:196600156-196600157(+) m6A 3'UTR       24981863//22608085 chr2:196600252-196600253(+) m6A 3'UTR       24981863//22575960//22608085 chr2:196600266-196600267(+) m6A 3'UTR       24981863//22575960//22608085 chr2:196600274-196600275(+) m6A 3'UTR       22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC39A10	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B3RC-5p
Interactor2: SLC39A10

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg