Detail Information

Basic Information:


  VIRBase ID:  

VHID00540946

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B2-3p:           POLR2J2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B2-3p POLR2J2
miRBase
Accession/Entrez ID		 MIMAT0031763 246721
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - HRPB11B//POLR2J3//RPB11b1//RPB11b2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR POLR2J2
chr7:102291421(-) A-I      intronic
chr7:102288607(-) A-I      intronic
chr7:102290181(-) A-I      intronic
chr7:102305972(-) A-I      intronic
chr7:102288583(-) A-I      intronic
chr7:102290198(-) A-I      intronic
chr7:102290214(-) A-I      intronic
chr7:102288637(-) A-I      intronic
chr7:102290226(-) A-I      intronic
chr7:102288595(-) A-I      intronic
chr7:102288594(-) A-I      intronic
chr7:102286915(-) A-I      intronic
chr7:102305936(-) A-I      intronic
chr7:102288495(-) A-I      intronic
chr7:102296932(-) A-I      intronic
chr7:102305926(-) A-I      intronic
chr7:102290104(-) A-I      intronic
chr7:102289977(-) A-I      intronic
chr7:102284503(-) A-I      intronic
chr7:102289961(-) A-I      intronic
chr7:102291385(-) A-I      intronic
chr7:102289960(-) A-I      intronic
chr7:102288515(-) A-I      intronic
chr7:102290267(-) A-I      intronic
chr7:102291377(-) A-I      intronic
chr7:102287550(-) A-I      intronic
chr7:102303552(-) A-I      intronic
chr7:102298529(-) A-I      intronic
chr7:102289917(-) A-I      intronic
chr7:102289886(-) A-I      intronic
chr7:102289844(-) A-I      intronic
chr7:102290238(-) A-I      intronic
chr7:102305935(-) A-I      intronic
chr7:102288585(-) A-I      intronic
chr7:102289827(-) A-I      intronic
chr7:102298520(-) A-I      intronic
chr7:102283678(-) A-I      intronic
chr7:102304833(-) A-I      intronic
chr7:102304845(-) A-I      intronic
chr7:102290230(-) A-I      intronic
chr7:102288464(-) A-I      intronic
chr7:102304856(-) A-I      intronic
chr7:102306000(-) A-I      intronic
chr7:102304879(-) A-I      intronic
chr7:102304881(-) A-I      intronic
chr7:102288563(-) A-I      intronic
chr7:102305772(-) A-I      intronic
chr7:102305825(-) A-I      intronic
chr7:102287505(-) A-I      intronic
chr7:102305750(-) A-I      intronic
chr7:102303615(-) A-I      intronic
chr7:102290204(-) A-I      intronic
chr7:102289748(-) A-I      intronic
chr7:102304783(-) A-I      intronic
chr7:102291363(-) A-I      intronic
chr7:102305863(-) A-I      intronic
chr7:102298342(-) A-I      intronic
chr7:102303579(-) A-I      intronic
chr7:102298317(-) A-I      intronic
chr7:102284947(-) A-I      intronic
chr7:102290164(-) A-I      intronic
chr7:102304193(-) A-I      intronic
chr7:102288462(-) A-I      intronic
chr7:102289231(-) A-I      intronic
chr7:102303566(-) A-I      intronic
chr7:102305987(-) A-I      intronic
chr7:102303600(-) A-I      intronic
chr7:102288472(-) A-I      intronic
chr7:102298366(-) A-I      intronic
chr7:102306018(-) A-I      intronic
chr7:102289080(-) A-I      intronic
chr7:102303578(-) A-I      intronic
chr7:102288522(-) A-I      intronic
chr7:102303553(-) A-I      intronic
chr7:102289506(-) A-I      intronic
chr7:102288489(-) A-I      intronic
chr7:102304827(-) A-I      intronic
chr7:102298329(-) A-I      intronic
chr7:102305778(-) A-I      intronic
chr7:102289034(-) A-I      intronic
chr7:102289086(-) A-I      intronic
chr7:102305824(-) A-I      intronic
chr7:102289692(-) A-I      intronic
chr7:102303664(-) A-I      intronic
chr7:102304805(-) A-I      intronic
chr7:102304230(-) A-I      intronic
chr7:102306054(-) A-I      intronic
chr7:102284624(-) A-I      intronic
chr7:102290158(-) A-I      intronic
chr7:102289223(-) A-I      intronic
chr7:102304782(-) A-I      intronic
chr7:102303585(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED POLR2J2
chr7:102277600(-) A-I exon 3'UTR    15342557
chr7:102277652(-) A-I exon 3'UTR    15342557
chr7:102277664(-) A-I exon 3'UTR    15258596
chr7:102277678(-) A-I exon 3'UTR    15258596
chr7:102277714(-) A-I exon 3'UTR    15342557
chr7:102277722(-) A-I exon 3'UTR    15258596
chr7:102277732(-) A-I exon 3'UTR    15342557
chr7:102277781(-) A-I exon 3'UTR    15342557   //15258596
chr7:102284947(-) A-I intron -    15258596
chr7:102284985(-) A-I intron -    15258596
chr7:102284992(-) A-I intron -    15258596
chr7:102288472(-) A-I intron -    15258596
chr7:102289034(-) A-I intron -    15258596
chr7:102289079(-) A-I intron -    15258596
chr7:102289080(-) A-I intron -    15258596
chr7:102289086(-) A-I intron -    15258596
chr7:102289223(-) A-I intron -    15258596
chr7:102289231(-) A-I intron -    15258596
chr7:102289489(-) A-I intron -    15342557
chr7:102289506(-) A-I intron -    15342557
chr7:102289692(-) A-I intron -    15342557
chr7:102289693(-) A-I intron -    15342557
chr7:102289719(-) A-I intron -    15342557
chr7:102289723(-) A-I intron -    15342557
chr7:102289748(-) A-I intron -    15342557
chr7:102289828(-) A-I intron -    15342557
chr7:102290158(-) A-I intron -    15258596
chr7:102290164(-) A-I intron -    15258596
chr7:102290204(-) A-I intron -    15258596
chr7:102290239(-) A-I intron -    15258596
chr7:102290244(-) A-I intron -    15258596
chr7:102290245(-) A-I intron -    15258596
chr7:102290323(-) A-I intron -    15258596
chr7:102290486(-) A-I intron -    15342557
chr7:102291307(-) A-I intron -    15342557
chr7:102291363(-) A-I intron -    15342557
chr7:102298317(-) A-I intron -    15258596
chr7:102298329(-) A-I intron -    15258596
chr7:102298342(-) A-I intron -    15258596
chr7:102298366(-) A-I intron -    15258596
chr7:102298368(-) A-I intron -    15258596
chr7:102303579(-) A-G intron -    22484847
chr7:102303664(-) A-G intron -    22484847
chr7:102303667(-) A-G intron -    22484847
chr7:102303893(-) A-G intron -    22484847
chr7:102303950(-) G-T intron -    22484847
chr7:102304193(-) A-G intron -    22484847
chr7:102304755(-) G-A intron -    22484847
chr7:102304783(-) A-G intron -    22484847
chr7:102304882(-) A-G intron -    22484847
chr7:102305824(-) A-G intron -    22484847
chr7:102305863(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase POLR2J2
chr7:102307696-102307697(-) m6A CDS       27773535
chr7:102309373-102309374(-) m6A CDS       24284625//24981863//27773535
chr7:102309388-102309389(-) m6A CDS       24284625//24981863//27773535
chr7:102309433-102309434(-) m6A CDS       24284625//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate POLR2J2
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B2-3p
Interactor2: POLR2J2

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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