Detail Information

Basic Information:


  VIRBase ID:  

VHID00540791

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B2-3p:           XXYLT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B2-3p XXYLT1
miRBase
Accession/Entrez ID		 MIMAT0031763 152002
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - C3orf21

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR XXYLT1
chr3:194885681(-) A-I      intronic
chr3:194896878(-) A-I      intronic
chr3:194868177(-) A-I      intronic
chr3:194888237(-) A-I      intronic
chr3:194896858(-) A-I      intronic
chr3:194885711(-) A-I      intronic
chr3:194926420(-) A-I      intronic
chr3:194961250(-) A-I      intronic
chr3:194971149(-) A-I      intronic
chr3:194971129(-) A-I      intronic
chr3:194971126(-) A-I      intronic
chr3:194926409(-) A-I      intronic
chr3:194966084(-) A-I      intronic
chr3:194922787(-) A-I      intronic
chr3:194926480(-) A-I      intronic
chr3:194898612(-) A-I      intronic
chr3:194899903(-) A-I      intronic
chr3:194926443(-) A-I      intronic
chr3:194896918(-) A-I      intronic
chr3:194882718(-) A-I      intronic
chr3:194868216(-) A-I      intronic
chr3:194896950(-) A-I      intronic
chr3:194896883(-) A-I      intronic
chr3:194974290(-) A-I      intronic
chr3:194907696(-) A-I      intronic
chr3:194927012(-) A-I      intronic
chr3:194895340(-) A-I      intronic
chr3:194949288(-) A-I      intronic
chr3:194926444(-) A-I      intronic
chr3:194900022(-) A-I      intronic
chr3:194899986(-) A-I      intronic
chr3:194896962(-) A-I      intronic
chr3:194969613(-) A-I      intronic
chr3:194974230(-) A-I      intronic
chr3:194882696(-) A-I      intronic
chr3:194896968(-) A-I      intronic
chr3:194926944(-) A-I      intronic
chr3:194985724(-) A-I      intronic
chr3:194896838(-) A-I      intronic
chr3:194882524(-) A-I      intronic
chr3:194898380(-) A-I      intronic
chr3:194926904(-) A-I      intronic
chr3:194974501(-) A-I      intronic
chr3:194888220(-) A-I      intronic
chr3:194926371(-) A-I      intronic
chr3:194900006(-) A-I      intronic
chr3:194949489(-) A-I      intronic
chr3:194895280(-) A-I      intronic
chr3:194926370(-) A-I      intronic
chr3:194868187(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED XXYLT1
chr3:194968767(-) A-G intron -    22484847
chr3:194840016(-) G-T intron -    22484847
chr3:194840020(-) T-G intron -    22484847
chr3:194887480(-) T-C intron -    22484847
chr3:194887591(-) T-C intron -    22484847
chr3:194887597(-) T-C intron -    22484847
chr3:194896963(-) A-G intron -    22484847
chr3:194898567(-) T-C intron -    22484847
chr3:194907696(-) A-G intron -    22484847
chr3:194926371(-) A-G intron -    22484847
chr3:194926904(-) A-G intron -    22484847
chr3:194943886(-) G-A intron -    22484847
chr3:194987147(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase XXYLT1
chr3:194789185-194789186(-) m6A 3'UTR       27773535
chr3:194789192-194789193(-) m6A 3'UTR       27773535
chr3:194789263-194789264(-) m6A 3'UTR       27773535
chr3:194789302-194789303(-) m6A 3'UTR       27773535
chr3:194789313-194789314(-) m6A 3'UTR       27773535
chr3:194789514-194789515(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr3:194789565-194789566(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789628-194789629(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789637-194789638(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789646-194789647(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789658-194789659(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194789674-194789675(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194789680-194789681(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194789713-194789714(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194789732-194789733(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194789757-194789758(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr3:194789811-194789812(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:194789835-194789836(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:194789843-194789844(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:194790030-194790031(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:194790035-194790036(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:194790089-194790090(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr3:194790105-194790106(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr3:194790205-194790206(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790239-194790240(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790267-194790268(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790311-194790312(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790346-194790347(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790377-194790378(-) m6A 3'UTR//exon       24209618
chr3:194790381-194790382(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790396-194790397(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790447-194790448(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790471-194790472(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790540-194790541(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790567-194790568(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790579-194790580(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:194790619-194790620(-) Am CDS//exon       -
chr3:194790630-194790631(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790636-194790637(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:194790738-194790739(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773536//22575960//22608085
chr3:194790802-194790803(-) m6A 3'UTR//CDS//exon       24284625
chr3:194790810-194790811(-) m6A 3'UTR//CDS//exon       24284625
chr3:194806635-194806636(-) m6A exon//intron       24284625
chr3:194901154-194901155(-) m6A 5'UTR//exon//intron       27773535
chr3:194901203-194901204(-) m6A 5'UTR//exon//intron       -
chr3:194904208-194904209(-) m6A exon//intron       -
chr3:194904256-194904257(-) m6A exon//intron       -
chr3:194904297-194904298(-) m6A exon//intron       -
chr3:194904306-194904307(-) m6A exon//intron       -
chr3:194991494-194991495(-) m6A CDS       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate XXYLT1
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B2-3p
Interactor2: XXYLT1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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