Detail Information

Basic Information:


  VIRBase ID:  

VHID00540553

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B2-3p:           GPRIN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B2-3p GPRIN1
miRBase
Accession/Entrez ID		 MIMAT0031763 114787
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - GRIN1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GPRIN1
chr5:176032606(-) A-I      intronic
chr5:176032757(-) A-I      intronic
chr5:176032007(-) A-I      intronic
chr5:176027375(-) A-I      intronic
chr5:176032192(-) A-I      intronic
chr5:176032368(-) A-I      intronic
chr5:176032805(-) A-I      intronic
chr5:176032559(-) A-I      intronic
chr5:176032367(-) A-I      intronic
chr5:176032701(-) A-I      intronic
chr5:176027341(-) A-I      intronic
chr5:176032638(-) A-I      intronic
chr5:176032811(-) A-I      intronic
chr5:176032191(-) A-I      intronic
chr5:176035167(-) A-I      intronic
chr5:176032789(-) A-I      intronic
chr5:176032743(-) A-I      intronic
chr5:176034442(-) A-I      intronic
chr5:176032259(-) A-I      intronic
chr5:176027670(-) A-I      intronic
chr5:176032547(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GPRIN1
chr5:176027849(-) T-C intron -    22484847
chr5:176027890(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GPRIN1
chr5:176023136-176023137(-) m6A 3'UTR       24284625
chr5:176023352-176023353(-) m6A 3'UTR       24284625//25456834//24981863
chr5:176023408-176023409(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr5:176023418-176023419(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr5:176023458-176023459(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr5:176023550-176023551(-) Y 3'UTR       26075521
chr5:176023597-176023598(-) m6A 3'UTR       24284625//24209618//24981863
chr5:176023637-176023638(-) m6A 3'UTR       24284625//24209618//24981863
chr5:176023823-176023824(-) m6A CDS       24284625//24209618
chr5:176024467-176024468(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr5:176024535-176024536(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr5:176024652-176024653(-) m6A CDS       24284625//25456834//24981863//27773536//22575960//22608085
chr5:176024683-176024684(-) m6A CDS       24284625//25456834//24981863//27773536//22575960
chr5:176024848-176024849(-) m6A CDS       24284625//25456834//24981863//27773536//22608085
chr5:176024917-176024918(-) m6A CDS       24284625//25456834//24981863//27773535//27773536//22608085
chr5:176025091-176025092(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:176025132-176025133(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr5:176025140-176025141(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr5:176025180-176025181(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr5:176025331-176025332(-) m6A CDS       24284625//24981863//27773535//22608085
chr5:176025376-176025377(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr5:176025415-176025416(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr5:176025441-176025442(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:176025465-176025466(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:176025487-176025488(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr5:176025521-176025522(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr5:176025561-176025562(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:176025637-176025638(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:176025702-176025703(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:176025726-176025727(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:176025748-176025749(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:176025829-176025830(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:176025898-176025899(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:176026086-176026087(-) m6A CDS       24284625//24209618//24981863//27773535//27773536//22608085
chr5:176026095-176026096(-) m6A CDS       24284625//24209618//24981863//27773535//27773536//22608085
chr5:176026426-176026427(-) m6A CDS       24284625//25456834//24981863//27773536//22608085
chr5:176026477-176026478(-) m6A CDS       24284625//25456834//24981863//27773536//22608085
chr5:176026510-176026511(-) m6A CDS       24284625//25456834//24981863//27773536//22608085
chr5:176026625-176026626(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr5:176026772-176026773(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr5:176026818-176026819(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr5:176026830-176026831(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr5:176026871-176026872(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GPRIN1
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B2-3p
Interactor2: GPRIN1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

Starting a new search, please wait ...