Detail Information

Basic Information:


  VIRBase ID:  

VHID00539914

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B2-3p:           LRRC47:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B2-3p LRRC47
miRBase
Accession/Entrez ID		 MIMAT0031763 57470
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LRRC47
chr1:3697392(-) A-I      3'UTR
chr1:3697416(-) A-I      3'UTR
chr1:3702916(-) A-I      intronic
chr1:3697418(-) A-I      3'UTR
chr1:3702915(-) A-I      intronic
chr1:3697440(-) A-I      3'UTR
chr1:3697432(-) A-I      3'UTR
chr1:3702447(-) A-I      intronic
chr1:3702594(-) A-I      intronic
chr1:3702571(-) A-I      intronic
chr1:3702607(-) A-I      intronic
chr1:3702647(-) A-I      intronic
chr1:3703007(-) A-I      intronic
chr1:3710615(-) A-I      intronic
chr1:3710659(-) A-I      intronic
chr1:3702431(-) A-I      intronic
chr1:3702481(-) A-I      intronic
chr1:3711509(-) A-I      intronic
chr1:3711360(-) A-I      intronic
chr1:3711098(-) A-I      intronic
chr1:3711159(-) A-I      intronic
chr1:3702601(-) A-I      intronic
chr1:3702502(-) A-I      intronic
chr1:3702531(-) A-I      intronic
chr1:3711176(-) A-I      intronic
chr1:3702932(-) A-I      intronic
chr1:3702817(-) A-I      intronic
chr1:3702982(-) A-I      intronic
chr1:3711183(-) A-I      intronic
chr1:3702964(-) A-I      intronic
chr1:3710634(-) A-I      intronic
chr1:3698309(-) A-I      intronic
chr1:3703002(-) A-I      intronic
chr1:3703038(-) A-I      intronic
chr1:3702889(-) A-I      intronic
chr1:3702604(-) A-I      intronic
chr1:3702706(-) A-I      intronic
chr1:3711452(-) A-I      intronic
chr1:3699763(-) A-I      intronic
chr1:3702581(-) A-I      intronic
chr1:3702598(-) A-I      intronic
chr1:3702449(-) A-I      intronic
chr1:3711448(-) A-I      intronic
chr1:3702805(-) A-I      intronic
chr1:3698997(-) A-I      intronic
chr1:3710570(-) A-I      intronic
chr1:3702545(-) A-I      intronic
chr1:3710590(-) A-I      intronic
chr1:3702555(-) A-I      intronic
chr1:3711013(-) A-I      intronic
chr1:3698483(-) A-I      intronic
chr1:3702818(-) A-I      intronic
chr1:3702870(-) A-I      intronic
chr1:3697057(-) A-I      3'UTR
chr1:3703060(-) A-I      intronic
chr1:3711368(-) A-I      intronic
chr1:3702905(-) A-I      intronic
chr1:3702882(-) A-I      intronic
chr1:3709282(-) A-I      intronic
chr1:3702940(-) A-I      intronic
chr1:3702661(-) A-I      intronic
chr1:3702602(-) A-I      intronic
chr1:3701317(-) A-I      intronic
chr1:3711003(-) A-I      intronic
chr1:3703028(-) A-I      intronic
chr1:3702942(-) A-I      intronic
chr1:3702494(-) A-I      intronic
chr1:3702707(-) A-I      intronic
chr1:3701553(-) A-I      intronic
chr1:3709813(-) A-I      intronic
chr1:3710584(-) A-I      intronic
chr1:3710696(-) A-I      intronic
chr1:3702530(-) A-I      intronic
chr1:3702977(-) A-I      intronic
chr1:3711092(-) A-I      intronic
chr1:3702693(-) A-I      intronic
chr1:3702562(-) A-I      intronic
chr1:3698921(-) A-I      intronic
chr1:3702844(-) A-I      intronic
chr1:3699131(-) A-I      intronic
chr1:3710757(-) A-I      intronic
chr1:3702501(-) A-I      intronic
chr1:3711536(-) A-I      intronic
chr1:3711535(-) A-I      intronic
chr1:3699076(-) A-I      intronic
chr1:3702566(-) A-I      intronic
chr1:3711049(-) A-I      intronic
chr1:3710592(-) A-I      intronic
chr1:3702952(-) A-I      intronic
chr1:3709873(-) A-I      intronic
chr1:3702539(-) A-I      intronic
chr1:3702819(-) A-I      intronic
chr1:3703059(-) A-I      intronic
chr1:3710999(-) A-I      intronic
chr1:3701303(-) A-I      intronic
chr1:3702536(-) A-I      intronic
chr1:3711075(-) A-I      intronic
chr1:3698287(-) A-I      intronic
chr1:3710504(-) A-I      intronic
chr1:3702650(-) A-I      intronic
chr1:3702464(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LRRC47
chr1:3702706(-) A-I intron -    22327324
chr1:3702964(-) A-I intron -    21960545
chr1:3698483(-) A-G intron -    22484847
chr1:3702494(-) A-G intron -    22484847
chr1:3702562(-) A-G intron -    22484847
chr1:3702566(-) A-G intron -    22484847
chr1:3702650(-) A-G intron -    22484847
chr1:3702693(-) A-G intron -    22484847
chr1:3702706(-) A-G intron -    22484847
chr1:3702870(-) A-G intron -    22484847
chr1:3702940(-) A-G intron -    22484847
chr1:3702942(-) A-G intron -    22484847
chr1:3702952(-) A-G intron -    22484847
chr1:3702964(-) A-G intron -    22484847
chr1:3702982(-) A-G intron -    22484847
chr1:3709282(-) A-G intron -    22484847
chr1:3710570(-) A-G intron -    22484847
chr1:3710592(-) A-G intron -    22484847
chr1:3710634(-) A-G intron -    22484847
chr1:3710757(-) A-G intron -    22484847
chr1:3711003(-) A-G intron -    22484847
chr1:3711049(-) A-G intron -    22484847
chr1:3711183(-) A-G intron -    22484847
chr1:3711368(-) A-G intron -    22484847
chr1:3711535(-) A-G intron -    22484847
chr1:3711536(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LRRC47
chr1:3695447-3695448(-) m6A 3'UTR       -
chr1:3695454-3695455(-) m6A 3'UTR       -
chr1:3695480-3695481(-) m6A 3'UTR       -
chr1:3695583-3695584(-) m6A 3'UTR       -
chr1:3695631-3695632(-) m6A 3'UTR       -
chr1:3695665-3695666(-) m6A 3'UTR       -
chr1:3695672-3695673(-) m6A 3'UTR       -
chr1:3695730-3695731(-) m6A 3'UTR       -
chr1:3695736-3695737(-) m6A 3'UTR       -
chr1:3695997-3695998(-) m6A 3'UTR       -
chr1:3696027-3696028(-) m6A 3'UTR       -
chr1:3696116-3696117(-) m6A 3'UTR       -
chr1:3696797-3696798(-) m6A 3'UTR       27773535
chr1:3696810-3696811(-) m6A 3'UTR       27773535
chr1:3696832-3696833(-) m6A 3'UTR       27773535
chr1:3696957-3696958(-) m6A 3'UTR       24981863
chr1:3697420-3697421(-) m6A 3'UTR       24209618
chr1:3697816-3697817(-) m6A CDS//exon       24284625
chr1:3700391-3700392(-) m6A CDS//intron       -
chr1:3700453-3700454(-) m6A CDS//intron       27371828//27773536
chr1:3700472-3700473(-) m6A CDS//intron       27371828//27773536
chr1:3700587-3700588(-) m1A CDS//exon       26863410
chr1:3701657-3701658(-) m6A CDS       24284625//25456834//27371828//27773536//22608085
chr1:3703455-3703456(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr1:3703539-3703540(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:3703738-3703739(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr1:3703773-3703774(-) m6A CDS       24284625//24209618//25456834//27773535//27371828//27773536//22575960
chr1:3703785-3703786(-) m6A CDS       24284625//24209618//25456834//27773535//27371828//27773536//22575960//22608085
chr1:3703821-3703822(-) m6A CDS       24284625//24209618//25456834//27773535//27371828//27773536//22575960//22608085
chr1:3703857-3703858(-) m6A CDS       24284625//24209618//25456834//27773535//27371828//27773536//22575960//22608085
chr1:3703866-3703867(-) m6A CDS       24284625//24209618//25456834//27773535//27371828//27773536//22575960//22608085
chr1:3712461-3712462(-) m6A CDS       24284625//24209618//25456834//27371828//27773536//22575960//22608085
chr1:3712491-3712492(-) m6A CDS       24284625//24209618//25456834//27371828//27773536//22575960//22608085
chr1:3712543-3712544(-) m6A CDS       24284625//25456834//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LRRC47
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B2-3p
Interactor2: LRRC47

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid
Support Database VmiReg

Starting a new search, please wait ...