Detail Information

Basic Information:


  VIRBase ID:  

VHID00539225

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B2-3p:           SBNO2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B2-3p SBNO2
miRBase
Accession/Entrez ID		 MIMAT0031763 22904
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - KIAA0963//SNO//STNO

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SBNO2
chr19:1129204(-) A-I      intronic
chr19:1129214(-) A-I      intronic
chr19:1129219(-) A-I      intronic
chr19:1129240(-) A-I      intronic
chr19:1129222(-) A-I      intronic
chr19:1128427(-) A-I      intronic
chr19:1128452(-) A-I      intronic
chr19:1128454(-) A-I      intronic
chr19:1128459(-) A-I      intronic
chr19:1128746(-) A-I      intronic
chr19:1128782(-) A-I      intronic
chr19:1128784(-) A-I      intronic
chr19:1118650(-) A-I      intronic
chr19:1128818(-) A-I      intronic
chr19:1128835(-) A-I      intronic
chr19:1129154(-) A-I      intronic
chr19:1160759(-) A-I      intronic
chr19:1160732(-) A-I      intronic
chr19:1118664(-) A-I      intronic
chr19:1118663(-) A-I      intronic
chr19:1143274(-) A-I      intronic
chr19:1118676(-) A-I      intronic
chr19:1127957(-) A-I      intronic
chr19:1153369(-) A-I      intronic
chr19:1143484(-) A-I      intronic
chr19:1143381(-) A-I      intronic
chr19:1143218(-) A-I      intronic
chr19:1141759(-) A-I      intronic
chr19:1129238(-) A-I      intronic
chr19:1160810(-) A-I      intronic
chr19:1160802(-) A-I      intronic
chr19:1160801(-) A-I      intronic
chr19:1141785(-) A-I      intronic
chr19:1143388(-) A-I      intronic
chr19:1143260(-) A-I      intronic
chr19:1129144(-) A-I      intronic
chr19:1141795(-) A-I      intronic
chr19:1141777(-) A-I      intronic
chr19:1142632(-) A-I      intronic
chr19:1139861(-) A-I      intronic
chr19:1128081(-) A-I      intronic
chr19:1141878(-) A-I      intronic
chr19:1143259(-) A-I      intronic
chr19:1128064(-) A-I      intronic
chr19:1160760(-) A-I      intronic
chr19:1153042(-) A-I      intronic
chr19:1118703(-) A-I      intronic
chr19:1141554(-) A-I      intronic
chr19:1139550(-) A-I      intronic
chr19:1142616(-) A-I      intronic
chr19:1141432(-) A-I      intronic
chr19:1143220(-) A-I      intronic
chr19:1129081(-) A-I      intronic
chr19:1128855(-) A-I      intronic
chr19:1139750(-) A-I      intronic
chr19:1143311(-) A-I      intronic
chr19:1128749(-) A-I      intronic
chr19:1143320(-) A-I      intronic
chr19:1141508(-) A-I      intronic
chr19:1139755(-) A-I      intronic
chr19:1153510(-) A-I      intronic
chr19:1145355(-) A-I      intronic
chr19:1143402(-) A-I      intronic
chr19:1128935(-) A-I      intronic
chr19:1141840(-) A-I      intronic
chr19:1139868(-) A-I      intronic
chr19:1143308(-) A-I      intronic
chr19:1153385(-) A-I      intronic
chr19:1141464(-) A-I      intronic
chr19:1143351(-) A-I      intronic
chr19:1128032(-) A-I      intronic
chr19:1152935(-) A-I      intronic
chr19:1129180(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SBNO2
chr19:1107826-1107827(-) m6A 3'UTR       27773535
chr19:1107872-1107873(-) m6A 3'UTR       27773535
chr19:1107881-1107882(-) m6A 3'UTR       27773535
chr19:1107905-1107906(-) m6A 3'UTR       -
chr19:1107923-1107924(-) m6A 3'UTR       -
chr19:1107955-1107956(-) m6A 3'UTR       -
chr19:1108037-1108038(-) m6A 3'UTR       -
chr19:1108181-1108182(-) m6A 3'UTR       24209618
chr19:1108189-1108190(-) m6A 3'UTR       24209618
chr19:1108201-1108202(-) m6A 3'UTR       24209618
chr19:1108366-1108367(-) m6A CDS       24209618//27371828
chr19:1108546-1108547(-) m6A CDS       24209618
chr19:1108794-1108795(-) m6A CDS//exon       24209618
chr19:1108798-1108799(-) Am CDS//exon       -
chr19:1108801-1108802(-) m6A CDS//exon       24209618
chr19:1108932-1108933(-) m6A CDS//exon       -
chr19:1108965-1108966(-) m6A CDS//exon       -
chr19:1110778-1110779(-) m6A CDS//exon       -
chr19:1110805-1110806(-) m6A CDS//exon       -
chr19:1110862-1110863(-) m6A CDS//exon       -
chr19:1111557-1111558(-) m6A CDS//exon       -
chr19:1111564-1111565(-) m6A CDS//exon       -
chr19:1111998-1111999(-) m6A CDS       -
chr19:1112046-1112047(-) m6A CDS       -
chr19:1112468-1112469(-) m6A CDS       -
chr19:1112853-1112854(-) m6A CDS       27773536
chr19:1113596-1113597(-) m6A CDS       24209618//27371828
chr19:1113621-1113622(-) m6A CDS       24209618//27371828
chr19:1113678-1113679(-) m6A CDS       24284625//24209618//27371828
chr19:1114315-1114316(-) m6A CDS       24284625//27371828
chr19:1114327-1114328(-) m6A CDS       24284625//27371828
chr19:1114373-1114374(-) m6A CDS       24284625//27371828
chr19:1115432-1115433(-) m6A exon//intron       27371828
chr19:1116045-1116046(-) m6A CDS//exon       24209618//27773535//27371828
chr19:1119130-1119131(-) m6A CDS//exon       24284625
chr19:1119547-1119548(-) m6A CDS//exon       24284625//22575960
chr19:1119601-1119602(-) m6A CDS//exon       24284625//22575960
chr19:1119945-1119946(-) m6A CDS//exon       27371828//22575960
chr19:1119954-1119955(-) m6A CDS//exon       27371828//22575960
chr19:1120082-1120083(-) m6A exon//intron       27371828
chr19:1122165-1122166(-) m6A CDS//exon       27371828
chr19:1122686-1122687(-) m6A CDS//exon       24284625
chr19:1122944-1122945(-) m6A CDS//exon       24284625//27371828
chr19:1122974-1122975(-) m6A CDS//exon       24284625//27773535//27371828
chr19:1123005-1123006(-) m6A CDS//exon       24284625//27773535//27371828
chr19:1123019-1123020(-) m6A CDS//exon       24284625//24981863//27773535//27371828
chr19:1123559-1123560(-) m6A CDS//exon       24284625//24981863//27773535//27371828
chr19:1123983-1123984(-) m6A CDS//exon       24284625//27773535//22575960
chr19:1127687-1127688(-) m6A CDS//exon       24284625//27773535
chr19:1127696-1127697(-) m6A CDS//exon       24284625//27773535
chr19:1127708-1127709(-) m6A CDS//exon       24284625//27773535
chr19:1127744-1127745(-) m6A CDS//exon       24284625
chr19:1132092-1132093(-) m6A CDS//exon//intron       24284625
chr19:1132135-1132136(-) m6A CDS//exon//intron       24284625
chr19:1132159-1132160(-) m6A CDS//exon//intron       24284625
chr19:1143779-1143780(-) Gm intron       -
chr19:1147324-1147325(-) m6A CDS       24284625//27371828
chr19:1147371-1147372(-) m6A CDS       24284625//24981863//27371828
chr19:1149412-1149413(-) m6A CDS       24284625//27371828
chr19:1154227-1154228(-) m6A CDS       24284625//27371828
chr19:1154249-1154250(-) m6A CDS       24284625//27371828//22575960
chr19:1154296-1154297(-) m6A 5'UTR       24284625//27371828//22575960
chr19:1168749-1168750(-) m6A 5'UTR//intron       24284625//24981863
chr19:1168820-1168821(-) m6A 5'UTR//intron       24284625//24981863
chr19:1169023-1169024(-) m6A 5'UTR//intron       -
chr19:1169040-1169041(-) m6A 5'UTR//intron       -
chr19:1169135-1169136(-) m6A 5'UTR//intron       -
chr19:1174182-1174183(-) m6A 5'UTR       24981863
chr19:1174212-1174213(-) m6A 5'UTR       24981863
chr19:1174251-1174252(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SBNO2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B2-3p
Interactor2: SBNO2

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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