Detail Information

Basic Information:


  VIRBase ID:  

VHID00538009

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B2-3p:           FASN:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B2-3p FASN
miRBase
Accession/Entrez ID		 MIMAT0031763 2194
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - FAS//OA-519//SDR27X1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FASN
chr17:80041164(-) A-I      NonSyn:Lys->Glu
chr17:80052543(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FASN
chr17:80041164(-) A-I exon CDS    19478186

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FASN
chr17:80036229-80036230(-) m6A 3'UTR       27773535
chr17:80036289-80036290(-) m6A 3'UTR       27773535
chr17:80036645-80036646(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr17:80036672-80036673(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr17:80036757-80036758(-) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085
chr17:80036800-80036801(-) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085
chr17:80036823-80036824(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr17:80036918-80036919(-) m6A 3'UTR//exon       24284625//27773535//22575960
chr17:80037248-80037249(-) m6A 3'UTR//CDS//exon       24284625//27773535//22575960
chr17:80037260-80037261(-) m6A 3'UTR//CDS//exon       24284625//27773535//22575960
chr17:80037395-80037396(-) m6A 3'UTR//CDS//exon       24284625//22575960
chr17:80037425-80037426(-) m6A 3'UTR//CDS//exon//intron       24284625//22575960
chr17:80037579-80037580(-) m6A exon//intron       24284625
chr17:80037776-80037777(-) m6A exon//intron       22575960
chr17:80037799-80037800(-) m6A exon//intron       22575960
chr17:80038031-80038032(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:80038071-80038072(-) Gm 3'UTR//CDS//exon//intron       -
chr17:80038719-80038720(-) m6A CDS//exon//intron       24284625//27773536//22575960
chr17:80038740-80038741(-) m6A CDS//exon//intron       24284625//27773536//22575960
chr17:80038750-80038751(-) m6A CDS//exon//intron       24284625//27773536//22575960
chr17:80039076-80039077(-) m6A CDS//exon//intron       24284625//27773536//22575960
chr17:80039170-80039171(-) m6A CDS//exon//intron       27773536//22575960
chr17:80039182-80039183(-) m6A CDS//exon//intron       27773536//22575960
chr17:80039197-80039198(-) m6A CDS//exon//intron       27773536//22575960
chr17:80039505-80039506(-) m6A CDS//intron       27773536//22575960
chr17:80039517-80039518(-) m6A CDS//intron       27773536//22575960
chr17:80039523-80039524(-) m6A CDS//intron       27773536//22575960
chr17:80039583-80039584(-) m6A CDS//intron       27773536//22575960
chr17:80039590-80039591(-) Y CDS//intron       26075521
chr17:80039595-80039596(-) m6A CDS//intron       27773536//22575960
chr17:80039671-80039672(-) Gm CDS//intron       -
chr17:80039957-80039958(-) m6A CDS//exon       27773536//22575960
chr17:80040006-80040007(-) m6A CDS//exon       27773536//22575960
chr17:80040201-80040202(-) m6A CDS//exon       27773536//22575960
chr17:80040207-80040208(-) m6A CDS//exon       27773536//22575960
chr17:80040259-80040260(-) m6A CDS//exon       27773536//22575960
chr17:80040264-80040265(-) m6A CDS//exon       27773536//22575960
chr17:80040792-80040793(-) m6A CDS//exon       24284625//22575960
chr17:80040921-80040922(-) m6A CDS//exon       24284625//22575960
chr17:80040949-80040950(-) m6A CDS//exon       24284625//22575960
chr17:80041403-80041404(-) m6A CDS       22575960
chr17:80041496-80041497(-) m6A CDS       22575960
chr17:80041691-80041692(-) m6A CDS       27773536//22575960
chr17:80042136-80042137(-) m6A CDS       22575960
chr17:80042183-80042184(-) m6A CDS       22575960
chr17:80042241-80042242(-) m6A CDS       22575960
chr17:80042251-80042252(-) m6A CDS       22575960
chr17:80042537-80042538(-) m6A CDS       24284625//22575960
chr17:80042739-80042740(-) m6A CDS       24284625//22575960
chr17:80042762-80042763(-) m6A CDS       24284625//22575960
chr17:80042778-80042779(-) m6A CDS       24284625//22575960
chr17:80042919-80042920(-) m6A CDS       24284625
chr17:80042946-80042947(-) m6A CDS       24284625
chr17:80043012-80043013(-) m6A CDS       24284625
chr17:80043171-80043172(-) m6A CDS//exon       22575960
chr17:80043415-80043416(-) m6A CDS//exon       24284625//22575960
chr17:80043508-80043509(-) m6A CDS//exon       24284625//27773536//22575960
chr17:80043577-80043578(-) m6A CDS       24284625//27773536//22575960
chr17:80044160-80044161(-) m6A CDS       24284625//27371828//27773536//22575960
chr17:80044175-80044176(-) m6A CDS       24284625//27371828//27773536//22575960
chr17:80044202-80044203(-) m6A CDS       24284625//27371828//27773536//22575960
chr17:80044226-80044227(-) m6A CDS       24284625//27371828//27773536//22575960
chr17:80044283-80044284(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr17:80044330-80044331(-) m6A CDS       24284625//26404942//27773535//27371828//27773536//22575960
chr17:80044346-80044347(-) m6A CDS       24284625//26404942//27773535//27371828//27773536//22575960
chr17:80044372-80044373(-) m6A CDS       24284625//26404942//27773535//27371828//27773536//22575960
chr17:80044413-80044414(-) m6A CDS       24284625//26404942//27773535//27371828//27773536//22575960
chr17:80045211-80045212(-) m6A CDS       24284625//27773536//22575960
chr17:80045331-80045332(-) m6A CDS       24284625//22575960
chr17:80045907-80045908(-) m6A CDS       22575960
chr17:80045994-80045995(-) m6A CDS       22575960
chr17:80046146-80046147(-) m6A CDS       22575960
chr17:80046312-80046313(-) m6A CDS       24284625//27773535//22575960
chr17:80046348-80046349(-) m6A CDS       24284625//27773535//22575960
chr17:80046379-80046380(-) m6A CDS       24284625//27773535//22575960
chr17:80046684-80046685(-) m6A CDS       24284625//27773536//22575960
chr17:80047196-80047197(-) m6A CDS       24284625//27773536//22575960
chr17:80047513-80047514(-) m6A CDS       22575960
chr17:80047532-80047533(-) m6A CDS       22575960
chr17:80047579-80047580(-) m6A CDS       27773536//22575960
chr17:80048299-80048300(-) m6A CDS       27773536//22575960
chr17:80048815-80048816(-) Cm CDS       -
chr17:80048896-80048897(-) m6A CDS       22575960
chr17:80049249-80049250(-) m6A CDS       27773536//22575960
chr17:80049456-80049457(-) m6A CDS       22575960
chr17:80051276-80051277(-) m6A CDS       24284625//27773536//22575960
chr17:80051551-80051552(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr17:80051559-80051560(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr17:80051581-80051582(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr17:80051620-80051621(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr17:80053248-80053249(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr17:80053308-80053309(-) m6A CDS       24284625//27371828//27773536//22575960
chr17:80054229-80054230(-) m6A CDS       24284625//27371828//27773536//22575960
chr17:80054250-80054251(-) m6A CDS       24284625//27371828//27773536//22575960
chr17:80054268-80054269(-) m6A CDS       24284625//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FASN
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B2-3p
Interactor2: FASN

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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