Basic Information:

  VIRBase ID:  

VHID00535009

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B20-3p:  MIMAT0031158          GTF3C3:  NM_001206774     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B20-3p	GTF3C3
miRBase Accession/Entrez ID	MIMAT0031158	9330
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TFIIIC102//TFiiiC2-102//TFIIICgamma

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GTF3C3	chr2:197656630(-) A-I      intronic chr2:197659851(-) A-I      intronic chr2:197656544(-) A-I      ncRNA chr2:197657009(-) A-I      intronic chr2:197656970(-) A-I      intronic chr2:197656996(-) A-I      intronic chr2:197656578(-) A-I      ncRNA chr2:197656598(-) A-I      ncRNA chr2:197656549(-) A-I      ncRNA

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GTF3C3	chr2:197643968(-) A-G intron -    22484847 chr2:197656549(-) A-G intron -    22484847 chr2:197656578(-) A-G intron -    22484847 chr2:197656598(-) A-G intron -    22484847 chr2:197656951(-) T-C intron -    22484847 chr2:197656970(-) A-G intron -    22484847 chr2:197657049(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GTF3C3	chr2:197628552-197628553(-) m6A 3'UTR       27773535 chr2:197628582-197628583(-) m6A 3'UTR       27773535 chr2:197628618-197628619(-) m6A 3'UTR       27773535 chr2:197628734-197628735(-) m6A 3'UTR       27773535 chr2:197628740-197628741(-) m6A 3'UTR       27773535 chr2:197628791-197628792(-) m6A 3'UTR       27773535 chr2:197628868-197628869(-) m6A 3'UTR       27773535 chr2:197628878-197628879(-) m6A 3'UTR       27773535 chr2:197653990-197653991(-) Y CDS//exon       26075521 chr2:197656163-197656164(-) m6A 3'UTR//CDS//exon       27773535 chr2:197657696-197657697(-) m6A 3'UTR//CDS       24981863//27773535//27371828 chr2:197657756-197657757(-) m6A 3'UTR//CDS       24981863//27773535//27371828 chr2:197657870-197657871(-) m6A 3'UTR//CDS       24981863//27773535//27371828 chr2:197662537-197662538(-) m6A 3'UTR//CDS       24981863//27773535//27371828 chr2:197664247-197664248(-) m6A CDS       27773535 chr2:197664314-197664315(-) m6A CDS       27773535 chr2:197664336-197664337(-) m6A 5'UTR//CDS       27773535 chr2:197664349-197664350(-) m6A 5'UTR//CDS       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GTF3C3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B20-3p
Interactor2: GTF3C3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg