Basic Information:

  VIRBase ID:  

VHID00530733

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B20-5p:  MIMAT0012172          NNT:  NM_001331026     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B20-5p	NNT
miRBase Accession/Entrez ID	MIMAT0012172	23530
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GCCD4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NNT	chr5:43681711(+) A-I      intronic chr5:43681619(+) A-I      intronic chr5:43681627(+) A-I      intronic chr5:43681631(+) A-I      intronic chr5:43681702(+) A-I      intronic chr5:43605524(+) A-I      intronic chr5:43681113(+) A-I      intronic chr5:43681170(+) A-I      intronic chr5:43681251(+) A-I      intronic chr5:43681287(+) A-I      intronic chr5:43605471(+) A-I      intronic chr5:43681519(+) A-I      intronic chr5:43681540(+) A-I      intronic chr5:43681580(+) A-I      intronic chr5:43604818(+) A-I      intronic chr5:43681177(+) A-I      intronic chr5:43681107(+) A-I      intronic chr5:43604886(+) A-I      intronic chr5:43681108(+) A-I      intronic chr5:43681570(+) A-I      intronic chr5:43604835(+) A-I      intronic chr5:43681160(+) A-I      intronic chr5:43681606(+) A-I      intronic chr5:43681531(+) A-I      intronic chr5:43604891(+) A-I      intronic chr5:43608313(+) A-I      intronic chr5:43681196(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NNT	chr5:43659697(+) G-A intron -    22484847 chr5:43681107(+) A-G intron -    22484847 chr5:43681108(+) A-G intron -    22484847 chr5:43681160(+) A-G intron -    22484847 chr5:43681177(+) A-G intron -    22484847 chr5:43681196(+) A-G intron -    22484847 chr5:43681531(+) A-G intron -    22484847 chr5:43681570(+) A-G intron -    22484847 chr5:43681676(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NNT	chr5:43602900-43602901(+) m6A 5'UTR//intron       24284625 chr5:43602912-43602913(+) m6A 5'UTR//intron       24284625 chr5:43602966-43602967(+) m6A 5'UTR//intron       24284625 chr5:43616006-43616007(+) m6A CDS       - chr5:43628321-43628322(+) Y CDS       26075521 chr5:43644411-43644412(+) m6A CDS       24981863 chr5:43644737-43644738(+) m6A CDS       24981863 chr5:43704557-43704558(+) m6A 3'UTR       24284625//24981863//22608085 chr5:43704625-43704626(+) m6A 3'UTR       24284625//24981863//22608085 chr5:43704646-43704647(+) m6A 3'UTR       24284625//24981863//22608085 chr5:43704842-43704843(+) m6A 3'UTR       22575960 chr5:43704864-43704865(+) m6A 3'UTR       22575960 chr5:43704905-43704906(+) m6A 3'UTR       22575960 chr5:43704962-43704963(+) m6A 3'UTR       22575960 chr5:43704972-43704973(+) m6A 3'UTR       22575960 chr5:43705108-43705109(+) m6A 3'UTR       24981863 chr5:43705136-43705137(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NNT	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B20-5p
Interactor2: NNT

Evidence Support:

Prediction-Evidence	PITA//Targetscan
Support Database	VmiReg