Detail Information

Basic Information:


  VIRBase ID:  

VHID00530355

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B20-5p:           YME1L1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B20-5p YME1L1
miRBase
Accession/Entrez ID		 MIMAT0012172 10730
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - FTSH//MEG4//OPA11//PAMP//YME1L

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR YME1L1
chr10:27400198(-) A-I      3'UTR
chr10:27400203(-) A-I      3'UTR
chr10:27400212(-) A-I      3'UTR
chr10:27400141(-) A-I      3'UTR
chr10:27400236(-) A-I      3'UTR
chr10:27400154(-) A-I      3'UTR
chr10:27400020(-) A-I      3'UTR
chr10:27400015(-) A-I      3'UTR
chr10:27400153(-) A-I      3'UTR
chr10:27400117(-) A-I      3'UTR
chr10:27400047(-) A-I      3'UTR
chr10:27400023(-) A-I      3'UTR
chr10:27403834(-) A-I      intronic
chr10:27415254(-) A-I      intronic
chr10:27404060(-) A-I      intronic
chr10:27430293(-) A-I      intronic
chr10:27438435(-) A-I      intronic
chr10:27407309(-) A-I      intronic
chr10:27404443(-) A-I      intronic
chr10:27440107(-) A-I      intronic
chr10:27404517(-) A-I      intronic
chr10:27438409(-) A-I      intronic
chr10:27440044(-) A-I      intronic
chr10:27414747(-) A-I      intronic
chr10:27432186(-) A-I      intronic
chr10:27432515(-) A-I      intronic
chr10:27432527(-) A-I      intronic
chr10:27429635(-) A-I      intronic
chr10:27403745(-) A-I      intronic
chr10:27414662(-) A-I      intronic
chr10:27432176(-) A-I      intronic
chr10:27432174(-) A-I      intronic
chr10:27432056(-) A-I      intronic
chr10:27429130(-) A-I      intronic
chr10:27414737(-) A-I      intronic
chr10:27431847(-) A-I      intronic
chr10:27401983(-) A-I      intronic
chr10:27432198(-) A-I      intronic
chr10:27432054(-) A-I      intronic
chr10:27421662(-) A-I      intronic
chr10:27401808(-) A-I      intronic
chr10:27401824(-) A-I      intronic
chr10:27431821(-) A-I      intronic
chr10:27403706(-) A-I      intronic
chr10:27431809(-) A-I      intronic
chr10:27402067(-) A-I      intronic
chr10:27432181(-) A-I      intronic
chr10:27403893(-) A-I      intronic
chr10:27403934(-) A-I      intronic
chr10:27404180(-) A-I      intronic
chr10:27404378(-) A-I      intronic
chr10:27429111(-) A-I      intronic
chr10:27404349(-) A-I      intronic
chr10:27414694(-) A-I      intronic
chr10:27429568(-) A-I      intronic
chr10:27431783(-) A-I      intronic
chr10:27430162(-) A-I      intronic
chr10:27432464(-) A-I      intronic
chr10:27429546(-) A-I      intronic
chr10:27414743(-) A-I      intronic
chr10:27414846(-) A-I      intronic
chr10:27429545(-) A-I      intronic
chr10:27429536(-) A-I      intronic
chr10:27440022(-) A-I      intronic
chr10:27415109(-) A-I      intronic
chr10:27415276(-) A-I      intronic
chr10:27429066(-) A-I      intronic
chr10:27415308(-) A-I      intronic
chr10:27414865(-) A-I      intronic
chr10:27421556(-) A-I      intronic
chr10:27406458(-) A-I      intronic
chr10:27432259(-) A-I      intronic
chr10:27429040(-) A-I      intronic
chr10:27421702(-) A-I      intronic
chr10:27431777(-) A-I      intronic
chr10:27404523(-) A-I      intronic
chr10:27439987(-) A-I      intronic
chr10:27415194(-) A-I      intronic
chr10:27403711(-) A-I      intronic
chr10:27421666(-) A-I      intronic
chr10:27432461(-) A-I      intronic
chr10:27404516(-) A-I      intronic
chr10:27402066(-) A-I      intronic
chr10:27439983(-) A-I      intronic
chr10:27404369(-) A-I      intronic
chr10:27439947(-) A-I      intronic
chr10:27400395(-) A-I      3'UTR
chr10:27400101(-) A-I      3'UTR
chr10:27400090(-) A-I      3'UTR
chr10:27400122(-) A-I      3'UTR
chr10:27400100(-) A-I      3'UTR
chr10:27421194(-) A-I      intronic
chr10:27401756(-) A-I      intronic
chr10:27414637(-) A-I      intronic
chr10:27404494(-) A-I      intronic
chr10:27415247(-) A-I      intronic
chr10:27415121(-) A-I      intronic
chr10:27429678(-) A-I      intronic
chr10:27430242(-) A-I      intronic
chr10:27403812(-) A-I      intronic
chr10:27415224(-) A-I      intronic
chr10:27415168(-) A-I      intronic
chr10:27403700(-) A-I      intronic
chr10:27429640(-) A-I      intronic
chr10:27425686(-) A-I      intronic
chr10:27404319(-) A-I      intronic
chr10:27431845(-) A-I      intronic
chr10:27432142(-) A-I      intronic
chr10:27404333(-) A-I      intronic
chr10:27432246(-) A-I      intronic
chr10:27431773(-) A-I      intronic
chr10:27431850(-) A-I      intronic
chr10:27430142(-) A-I      intronic
chr10:27414763(-) A-I      intronic
chr10:27407394(-) A-I      intronic
chr10:27432055(-) A-I      intronic
chr10:27402086(-) A-I      intronic
chr10:27429067(-) A-I      intronic
chr10:27421168(-) A-I      intronic
chr10:27404511(-) A-I      intronic
chr10:27429101(-) A-I      intronic
chr10:27432550(-) A-I      intronic
chr10:27404525(-) A-I      intronic
chr10:27432116(-) A-I      intronic
chr10:27401792(-) A-I      intronic
chr10:27404082(-) A-I      intronic
chr10:27415124(-) A-I      intronic
chr10:27429115(-) A-I      intronic
chr10:27401806(-) A-I      intronic
chr10:27425770(-) A-I      intronic
chr10:27402037(-) A-I      intronic
chr10:27414843(-) A-I      intronic
chr10:27415127(-) A-I      intronic
chr10:27421665(-) A-I      intronic
chr10:27404379(-) A-I      intronic
chr10:27431849(-) A-I      intronic
chr10:27425531(-) A-I      intronic
chr10:27401672(-) A-I      intronic
chr10:27440059(-) A-I      intronic
chr10:27430119(-) A-I      intronic
chr10:27421561(-) A-I      intronic
chr10:27415311(-) A-I      intronic
chr10:27401801(-) A-I      intronic
chr10:27428261(-) A-I      intronic
chr10:27433881(-) A-I      intronic
chr10:27414708(-) A-I      intronic
chr10:27415263(-) A-I      intronic
chr10:27432238(-) A-I      intronic
chr10:27403787(-) A-I      intronic
chr10:27406375(-) A-I      intronic
chr10:27430122(-) A-I      intronic
chr10:27421317(-) A-I      intronic
chr10:27401971(-) A-I      intronic
chr10:27414734(-) A-I      intronic
chr10:27414655(-) A-I      intronic
chr10:27421197(-) A-I      intronic
chr10:27421167(-) A-I      intronic
chr10:27406388(-) A-I      intronic
chr10:27439993(-) A-I      intronic
chr10:27415262(-) A-I      intronic
chr10:27415259(-) A-I      intronic
chr10:27421626(-) A-I      intronic
chr10:27432564(-) A-I      intronic
chr10:27421604(-) A-I      intronic
chr10:27415223(-) A-I      intronic
chr10:27401733(-) A-I      intronic
chr10:27430067(-) A-I      intronic
chr10:27414878(-) A-I      intronic
chr10:27401963(-) A-I      intronic
chr10:27432505(-) A-I      intronic
chr10:27432215(-) A-I      intronic
chr10:27421222(-) A-I      intronic
chr10:27402054(-) A-I      intronic
chr10:27402072(-) A-I      intronic
chr10:27429093(-) A-I      intronic
chr10:27401807(-) A-I      intronic
chr10:27430203(-) A-I      intronic
chr10:27425693(-) A-I      intronic
chr10:27439922(-) A-I      intronic
chr10:27414718(-) A-I      intronic
chr10:27417493(-) A-I      intronic
chr10:27417751(-) A-I      intronic
chr10:27404099(-) A-I      intronic
chr10:27404280(-) A-I      intronic
chr10:27402852(-) A-I      intronic
chr10:27440038(-) A-I      intronic
chr10:27400155(-) A-I      3'UTR
chr10:27400235(-) A-I      3'UTR
chr10:27400173(-) A-I      3'UTR
chr10:27400226(-) A-I      3'UTR
chr10:27400373(-) A-I      3'UTR
chr10:27415206(-) A-I      intronic
chr10:27400387(-) A-I      3'UTR
chr10:27400390(-) A-I      3'UTR
chr10:27400082(-) A-I      3'UTR
chr10:27401856(-) A-I      intronic
chr10:27414666(-) A-I      intronic
chr10:27400164(-) A-I      3'UTR
chr10:27438929(-) A-I      intronic
chr10:27401810(-) A-I      intronic
chr10:27399893(-) A-I      3'UTR
chr10:27400211(-) A-I      3'UTR
chr10:27401823(-) A-I      intronic
chr10:27439100(-) A-I      intronic
chr10:27404401(-) A-I      intronic
chr10:27400316(-) A-I      3'UTR
chr10:27400396(-) A-I      3'UTR
chr10:27414750(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED YME1L1
chr10:27415206(-) A-I intron -    21960545
chr10:27415254(-) A-I intron -    21960545
chr10:27415308(-) A-I intron -    21960545
chr10:27403706(-) A-G intron -    22484847
chr10:27414655(-) A-G intron -    22484847
chr10:27415121(-) A-G intron -    22484847
chr10:27415263(-) A-G intron -    22484847
chr10:27428261(-) A-G intron -    22484847
chr10:27429130(-) A-G intron -    22484847
chr10:27430203(-) A-G intron -    22484847
chr10:27432246(-) A-G intron -    22484847
chr10:27432259(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase YME1L1
chr10:27399823-27399824(-) m6A 3'UTR       24981863
chr10:27399896-27399897(-) m6A 3'UTR       24981863
chr10:27400011-27400012(-) m6A 3'UTR       24981863
chr10:27400161-27400162(-) m6A 3'UTR       24209618
chr10:27400177-27400178(-) m6A 3'UTR       24209618
chr10:27400200-27400201(-) m6A 3'UTR       24209618
chr10:27400338-27400339(-) m6A 3'UTR       -
chr10:27400447-27400448(-) m6A 3'UTR       -
chr10:27401015-27401016(-) m6A CDS       26404942
chr10:27401028-27401029(-) m6A CDS       26404942
chr10:27403473-27403474(-) m6A CDS       26404942
chr10:27403490-27403491(-) m6A CDS       26404942
chr10:27403503-27403504(-) m6A CDS       26404942
chr10:27405165-27405166(-) m6A CDS       27773535
chr10:27405237-27405238(-) m6A CDS       27773535
chr10:27406507-27406508(-) m6A CDS       27773535
chr10:27406614-27406615(-) m6A CDS       24981863//27773535
chr10:27406619-27406620(-) m6A CDS       24981863//27773535
chr10:27408236-27408237(-) m6A CDS       24981863
chr10:27410335-27410336(-) m6A CDS       26404942
chr10:27410370-27410371(-) m6A CDS       26404942
chr10:27411800-27411801(-) m6A CDS       26404942
chr10:27437919-27437920(-) m6A CDS       27371828//27773536
chr10:27442196-27442197(-) m6A 5'UTR//intron       25456834//24981863//27773535//27371828//27773536
chr10:27443191-27443192(-) m6A 5'UTR       24284625//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr10:27443444-27443445(-) m6A 5'UTR       24209618//24981863//27773535//22608085
chr10:27443454-27443455(-) m6A 5'UTR       24209618//24981863//27773535//22608085
chr10:27443525-27443526(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//27773536//22608085
chr10:27443594-27443595(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536//22608085
chr10:27443729-27443730(-) m6A 5'UTR       24284625//24981863//27773535//22608085
chr10:27443788-27443789(-) m6A 5'UTR       24284625//24981863//27773535//22608085
chr10:27443798-27443799(-) m6A 5'UTR       24284625//24981863//27773535//22608085
chr10:27443871-27443872(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22608085
chr10:27443947-27443948(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr10:27444058-27444059(-) m6A 5'UTR       24284625//25456834//24981863//22608085
chr10:27444093-27444094(-) m6A 5'UTR       25456834//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate YME1L1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B20-5p
Interactor2: YME1L1

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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