Detail Information

Basic Information:


  VIRBase ID:  

VHID00529633

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B20-5p:           UBP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B20-5p UBP1
miRBase
Accession/Entrez ID		 MIMAT0012172 7342
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - LBP-1a//LBP-1B//LBP1A//LBP1B

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR UBP1
chr3:33462105(-) A-I      intronic
chr3:33468552(-) A-I      intronic
chr3:33468562(-) A-I      intronic
chr3:33468724(-) A-I      intronic
chr3:33469454(-) A-I      intronic
chr3:33475069(-) A-I      intronic
chr3:33462119(-) A-I      intronic
chr3:33469458(-) A-I      intronic
chr3:33473633(-) A-I      intronic
chr3:33470843(-) A-I      intronic
chr3:33462135(-) A-I      intronic
chr3:33462154(-) A-I      intronic
chr3:33462158(-) A-I      intronic
chr3:33462861(-) A-I      intronic
chr3:33462113(-) A-I      intronic
chr3:33460304(-) A-I      intronic
chr3:33461926(-) A-I      intronic
chr3:33461885(-) A-I      intronic
chr3:33461875(-) A-I      intronic
chr3:33462897(-) A-I      intronic
chr3:33463034(-) A-I      intronic
chr3:33463373(-) A-I      intronic
chr3:33470870(-) A-I      intronic
chr3:33463379(-) A-I      intronic
chr3:33470982(-) A-I      intronic
chr3:33473599(-) A-I      intronic
chr3:33473678(-) A-I      intronic
chr3:33473784(-) A-I      intronic
chr3:33474658(-) A-I      intronic
chr3:33474713(-) A-I      intronic
chr3:33474731(-) A-I      intronic
chr3:33460289(-) A-I      intronic
chr3:33460227(-) A-I      intronic
chr3:33474732(-) A-I      intronic
chr3:33474746(-) A-I      intronic
chr3:33471038(-) A-I      intronic
chr3:33473734(-) A-I      intronic
chr3:33477081(-) A-I      intronic
chr3:33477003(-) A-I      intronic
chr3:33464643(-) A-I      intronic
chr3:33476405(-) A-I      intronic
chr3:33476354(-) A-I      intronic
chr3:33476276(-) A-I      intronic
chr3:33476255(-) A-I      intronic
chr3:33476246(-) A-I      intronic
chr3:33475123(-) A-I      intronic
chr3:33475093(-) A-I      intronic
chr3:33469508(-) A-I      intronic
chr3:33475082(-) A-I      intronic
chr3:33470957(-) A-I      intronic
chr3:33473603(-) A-I      intronic
chr3:33473625(-) A-I      intronic
chr3:33464647(-) A-I      intronic
chr3:33464648(-) A-I      intronic
chr3:33464656(-) A-I      intronic
chr3:33464795(-) A-I      intronic
chr3:33464711(-) A-I      intronic
chr3:33477069(-) A-I      intronic
chr3:33477124(-) A-I      intronic
chr3:33474717(-) A-I      intronic
chr3:33475896(-) A-I      intronic
chr3:33469530(-) A-I      intronic
chr3:33476963(-) A-I      intronic
chr3:33475112(-) A-I      intronic
chr3:33468494(-) A-I      intronic
chr3:33464135(-) A-I      intronic
chr3:33464700(-) A-I      intronic
chr3:33474747(-) A-I      intronic
chr3:33468650(-) A-I      intronic
chr3:33461856(-) A-I      intronic
chr3:33472986(-) A-I      intronic
chr3:33473120(-) A-I      intronic
chr3:33473707(-) A-I      intronic
chr3:33461894(-) A-I      intronic
chr3:33468651(-) A-I      intronic
chr3:33464782(-) A-I      intronic
chr3:33463323(-) A-I      intronic
chr3:33473740(-) A-I      intronic
chr3:33477013(-) A-I      intronic
chr3:33473691(-) A-I      intronic
chr3:33475416(-) A-I      intronic
chr3:33459933(-) A-I      intronic
chr3:33471094(-) A-I      intronic
chr3:33464122(-) A-I      intronic
chr3:33471093(-) A-I      intronic
chr3:33475954(-) A-I      intronic
chr3:33469562(-) A-I      intronic
chr3:33464173(-) A-I      intronic
chr3:33472985(-) A-I      intronic
chr3:33476275(-) A-I      intronic
chr3:33475902(-) A-I      intronic
chr3:33476383(-) A-I      intronic
chr3:33462929(-) A-I      intronic
chr3:33464171(-) A-I      intronic
chr3:33460871(-) A-I      intronic
chr3:33469449(-) A-I      intronic
chr3:33476953(-) A-I      intronic
chr3:33469439(-) A-I      intronic
chr3:33474620(-) A-I      intronic
chr3:33463436(-) A-I      intronic
chr3:33460299(-) A-I      intronic
chr3:33469517(-) A-I      intronic
chr3:33473156(-) A-I      intronic
chr3:33472995(-) A-I      intronic
chr3:33474691(-) A-I      intronic
chr3:33473704(-) A-I      intronic
chr3:33473602(-) A-I      intronic
chr3:33466293(-) A-I      intronic
chr3:33473185(-) A-I      intronic
chr3:33461929(-) A-I      intronic
chr3:33475957(-) A-I      intronic
chr3:33461890(-) A-I      intronic
chr3:33460251(-) A-I      intronic
chr3:33469587(-) A-I      intronic
chr3:33468597(-) A-I      intronic
chr3:33477009(-) A-I      intronic
chr3:33463453(-) A-I      intronic
chr3:33474965(-) A-I      intronic
chr3:33463370(-) A-I      intronic
chr3:33477095(-) A-I      intronic
chr3:33469598(-) A-I      intronic
chr3:33464705(-) A-I      intronic
chr3:33473062(-) A-I      intronic
chr3:33463284(-) A-I      intronic
chr3:33473668(-) A-I      intronic
chr3:33461878(-) A-I      intronic
chr3:33470959(-) A-I      intronic
chr3:33471080(-) A-I      intronic
chr3:33464714(-) A-I      intronic
chr3:33469425(-) A-I      intronic
chr3:33460736(-) A-I      intronic
chr3:33475997(-) A-I      intronic
chr3:33474625(-) A-I      intronic
chr3:33476443(-) A-I      intronic
chr3:33473056(-) A-I      intronic
chr3:33464601(-) A-I      intronic
chr3:33470903(-) A-I      intronic
chr3:33476051(-) A-I      intronic
chr3:33460134(-) A-I      intronic
chr3:33470967(-) A-I      intronic
chr3:33473218(-) A-I      intronic
chr3:33475928(-) A-I      intronic
chr3:33463493(-) A-I      intronic
chr3:33468565(-) A-I      intronic
chr3:33475101(-) A-I      intronic
chr3:33462980(-) A-I      intronic
chr3:33474982(-) A-I      intronic
chr3:33473106(-) A-I      intronic
chr3:33460188(-) A-I      intronic
chr3:33475345(-) A-I      intronic
chr3:33463454(-) A-I      intronic
chr3:33473699(-) A-I      intronic
chr3:33470954(-) A-I      intronic
chr3:33463521(-) A-I      intronic
chr3:33469511(-) A-I      intronic
chr3:33463420(-) A-I      intronic
chr3:33476343(-) A-I      intronic
chr3:33472973(-) A-I      intronic
chr3:33471022(-) A-I      intronic
chr3:33473113(-) A-I      intronic
chr3:33475941(-) A-I      intronic
chr3:33473043(-) A-I      intronic
chr3:33466321(-) A-I      intronic
chr3:33459930(-) A-I      intronic
chr3:33475410(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED UBP1
chr3:33477095(-) A-I intron -    21960545
chr3:33459930(-) A-G intron -    22484847
chr3:33459933(-) A-G intron -    22484847
chr3:33460134(-) A-G intron -    22484847
chr3:33460188(-) A-G intron -    22484847
chr3:33460229(-) A-G intron -    22484847
chr3:33460251(-) A-G intron -    22484847
chr3:33460299(-) A-G intron -    22484847
chr3:33461037(-) A-G intron -    22484847
chr3:33461081(-) A-G intron -    22484847
chr3:33462098(-) T-C intron -    22484847
chr3:33463420(-) A-G intron -    22484847
chr3:33463454(-) A-G intron -    22484847
chr3:33463521(-) A-G intron -    22484847
chr3:33464117(-) A-G intron -    22484847
chr3:33464122(-) A-G intron -    22484847
chr3:33464542(-) A-C intron -    22484847
chr3:33464700(-) A-G intron -    22484847
chr3:33464705(-) A-G intron -    22484847
chr3:33464711(-) A-G intron -    22484847
chr3:33464714(-) A-G intron -    22484847
chr3:33464781(-) A-G intron -    22484847
chr3:33464782(-) A-G intron -    22484847
chr3:33468494(-) A-G intron -    22484847
chr3:33468658(-) A-G intron -    22484847
chr3:33469587(-) A-G intron -    22484847
chr3:33470903(-) A-G intron -    22484847
chr3:33470906(-) A-G intron -    22484847
chr3:33470959(-) A-G intron -    22484847
chr3:33470960(-) A-G intron -    22484847
chr3:33470967(-) A-G intron -    22484847
chr3:33471022(-) A-G intron -    22484847
chr3:33471080(-) A-G intron -    22484847
chr3:33473056(-) A-G intron -    22484847
chr3:33473106(-) A-G intron -    22484847
chr3:33473110(-) A-G intron -    22484847
chr3:33473113(-) A-G intron -    22484847
chr3:33473120(-) A-G intron -    22484847
chr3:33473156(-) A-G intron -    22484847
chr3:33473185(-) A-G intron -    22484847
chr3:33473186(-) A-G intron -    22484847
chr3:33473235(-) C-T intron -    22484847
chr3:33473691(-) A-G intron -    22484847
chr3:33473704(-) A-G intron -    22484847
chr3:33474691(-) A-G intron -    22484847
chr3:33474717(-) A-G intron -    22484847
chr3:33474721(-) A-G intron -    22484847
chr3:33474747(-) A-G intron -    22484847
chr3:33475101(-) A-G intron -    22484847
chr3:33475410(-) A-G intron -    22484847
chr3:33475416(-) A-G intron -    22484847
chr3:33475927(-) A-G intron -    22484847
chr3:33475941(-) A-G intron -    22484847
chr3:33476382(-) A-G intron -    22484847
chr3:33476443(-) A-G intron -    22484847
chr3:33477009(-) A-G intron -    22484847
chr3:33477044(-) A-G intron -    22484847
chr3:33477069(-) A-G intron -    22484847
chr3:33477095(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase UBP1
chr3:33430563-33430564(-) m6A 3'UTR//exon       27773535
chr3:33430648-33430649(-) m6A 3'UTR//exon       27773535
chr3:33430726-33430727(-) m6A 3'UTR//exon       27773535
chr3:33430794-33430795(-) m6A 3'UTR//exon       27773535
chr3:33430815-33430816(-) m6A 3'UTR//exon       27773535
chr3:33430838-33430839(-) m6A 3'UTR//exon       27773535
chr3:33430923-33430924(-) m6A 3'UTR//exon       27773535
chr3:33430946-33430947(-) m6A 3'UTR//exon       24284625//26404942//27773535
chr3:33431034-33431035(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr3:33431108-33431109(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr3:33431146-33431147(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr3:33431205-33431206(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr3:33431389-33431390(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr3:33431420-33431421(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr3:33431471-33431472(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr3:33431703-33431704(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr3:33431761-33431762(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//27371828//22608085
chr3:33431804-33431805(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr3:33431809-33431810(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr3:33432886-33432887(-) m6A exon//intron       27773535
chr3:33432965-33432966(-) m6A exon//intron       27773535
chr3:33433491-33433492(-) m6A exon//intron       27773535
chr3:33433612-33433613(-) m6A exon//intron       27773535
chr3:33433670-33433671(-) m6A exon//intron       27773535
chr3:33441699-33441700(-) m6A CDS//exon       27773535
chr3:33441721-33441722(-) m6A CDS//exon       24284625//27773535
chr3:33441743-33441744(-) m6A CDS//exon       24284625//27773535
chr3:33442464-33442465(-) m6A CDS//exon       24284625//27773535
chr3:33444295-33444296(-) m6A CDS//exon       24284625//24981863//27773535
chr3:33450212-33450213(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828
chr3:33450225-33450226(-) m6A CDS//exon//intron       24981863//27773535//27371828
chr3:33450253-33450254(-) m6A CDS//exon//intron       24981863//27773535//27371828
chr3:33450783-33450784(-) m6A CDS//exon       24981863
chr3:33450810-33450811(-) m6A 5'UTR//CDS//exon       24981863
chr3:33450817-33450818(-) m6A 5'UTR//CDS//exon       24981863
chr3:33450824-33450825(-) m6A 5'UTR//CDS//exon       24981863
chr3:33457528-33457529(-) m6A exon//intron       24981863
chr3:33481881-33481882(-) m6A 5'UTR//intron       25456834//24981863//27773536
chr3:33482008-33482009(-) m6A 5'UTR//intron       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate UBP1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B20-5p
Interactor2: UBP1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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