Basic Information:

  VIRBase ID:  

VHID00528746

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B20-5p:  MIMAT0012172          HLA-DOA:  NM_002119     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B20-5p	HLA-DOA
miRBase Accession/Entrez ID	MIMAT0012172	3111
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HLA-DNA//HLA-DZA//HLADZ

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	HLA-DOA	chr6:32973019(-) A-I exon 3'UTR    15342557   //15258596 chr6:32973145(-) A-I exon 3'UTR    15342557   //15258596 chr6:32973157(-) A-I exon 3'UTR    15342557   //15258596 chr6:32973169(-) A-I exon 3'UTR    15342557   //15258596 chr6:32973217(-) A-I exon 3'UTR    15342557 chr6:32973281(-) A-I exon 3'UTR    15342557 chr6:32973575(-) A-I exon 3'UTR    15258596 chr6:32973630(-) A-I exon 3'UTR    15258596 chr6:32973631(-) A-I exon 3'UTR    15258596

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HLA-DOA	chr6:32972106-32972107(-) m6A 3'UTR       28052920 chr6:32972249-32972250(-) m6A 3'UTR       25456834//24981863//28052920 chr6:32972661-32972662(-) m6A 3'UTR       24981863 chr6:32972710-32972711(-) m6A 3'UTR       24981863//28052920 chr6:32972727-32972728(-) m6A 3'UTR       24981863//28052920 chr6:32972759-32972760(-) m6A 3'UTR       24981863//28052920 chr6:32973149-32973150(-) m6A 3'UTR       - chr6:32975219-32975220(-) m6A 3'UTR//CDS//exon       - chr6:32975243-32975244(-) m6A 3'UTR//CDS//exon       - chr6:32975293-32975294(-) m6A 3'UTR//CDS//exon       27773536 chr6:32975390-32975391(-) m6A exon//intron       27773536 chr6:32977281-32977282(-) Y 5'UTR//CDS//exon       26075521 chr6:32977340-32977341(-) m6A 5'UTR//exon       - chr6:32977346-32977347(-) m6A 5'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HLA-DOA	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B20-5p
Interactor2: HLA-DOA

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg