Detail Information

Basic Information:


  VIRBase ID:  

VHID00527675

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B4:           RASGEF1C:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B4 RASGEF1C
miRBase
Accession/Entrez ID		 MIMAT0012171 255426
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RASGEF1C
chr5:179572500(-) A-I      intronic
chr5:179572565(-) A-I      intronic
chr5:179572566(-) A-I      intronic
chr5:179572508(-) A-I      intronic
chr5:179572507(-) A-I      intronic
chr5:179542197(-) A-I      intronic
chr5:179579849(-) A-I      intronic
chr5:179632838(-) A-I      intronic
chr5:179576584(-) A-I      intronic
chr5:179626803(-) A-I      intronic
chr5:179577579(-) A-I      intronic
chr5:179576594(-) A-I      intronic
chr5:179627586(-) A-I      intronic
chr5:179632073(-) A-I      intronic
chr5:179535473(-) A-I      intronic
chr5:179632848(-) A-I      intronic
chr5:179535474(-) A-I      intronic
chr5:179616774(-) A-I      intronic
chr5:179602832(-) A-I      intronic
chr5:179623389(-) A-I      intronic
chr5:179535340(-) A-I      intronic
chr5:179584588(-) A-I      intronic
chr5:179568937(-) A-I      intronic
chr5:179627232(-) A-I      intronic
chr5:179583519(-) A-I      intronic
chr5:179584540(-) A-I      intronic
chr5:179535280(-) A-I      intronic
chr5:179618628(-) A-I      intronic
chr5:179627005(-) A-I      intronic
chr5:179535406(-) A-I      intronic
chr5:179581709(-) A-I      intronic
chr5:179534868(-) A-I      intronic
chr5:179579828(-) A-I      intronic
chr5:179627148(-) A-I      intronic
chr5:179535294(-) A-I      intronic
chr5:179602743(-) A-I      intronic
chr5:179605181(-) A-I      intronic
chr5:179535244(-) A-I      intronic
chr5:179616739(-) A-I      intronic
chr5:179626989(-) A-I      intronic
chr5:179534886(-) A-I      intronic
chr5:179548452(-) A-I      intronic
chr5:179581765(-) A-I      intronic
chr5:179579789(-) A-I      intronic
chr5:179632185(-) A-I      intronic
chr5:179530216(-) A-I      intronic
chr5:179571517(-) A-I      intronic
chr5:179617655(-) A-I      intronic
chr5:179617662(-) A-I      intronic
chr5:179627055(-) A-I      intronic
chr5:179576090(-) A-I      intronic
chr5:179595305(-) A-I      intronic
chr5:179627382(-) A-I      intronic
chr5:179579799(-) A-I      intronic
chr5:179581719(-) A-I      intronic
chr5:179534746(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RASGEF1C
chr5:179622679(-) C-T intron -    22484847
chr5:179622703(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RASGEF1C
chr5:179528096-179528097(-) m6A 3'UTR       24209618//25456834//27773536//22608085
chr5:179528160-179528161(-) m6A 3'UTR       24209618//25456834//27773536//22608085
chr5:179528177-179528178(-) m6A 3'UTR       24209618//25456834//27773536//22608085
chr5:179528202-179528203(-) m6A 3'UTR       24209618//25456834//27773536//22608085
chr5:179528240-179528241(-) m6A 3'UTR       24209618//25456834//27773536//22608085
chr5:179528256-179528257(-) m6A 3'UTR       24209618//25456834//27773536//22608085
chr5:179528297-179528298(-) m6A 3'UTR       24209618//25456834//27773536//22608085
chr5:179528314-179528315(-) m6A 3'UTR       24209618//25456834//22608085
chr5:179528326-179528327(-) m6A 3'UTR       24209618//25456834//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RASGEF1C
Exosome Blood     -
Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B4
Interactor2: RASGEF1C

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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