Basic Information:

  VIRBase ID:  

VHID00527604

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B4:  MIMAT0012171          TSNARE1:  NM_001366903     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B4	TSNARE1
miRBase Accession/Entrez ID	MIMAT0012171	203062
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TSNARE1	chr8:143447643(-) A-I      intronic chr8:143470043(-) A-I      intronic chr8:143473599(-) A-I      intronic chr8:143392731(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TSNARE1	chr8:143351920-143351921(-) m6A 3'UTR//intron       25456834 chr8:143352063-143352064(-) m6A 3'UTR//intron       24284625//25456834//24981863//27371828//27773536//22608085 chr8:143352196-143352197(-) m6A 3'UTR//intron       24209618//25456834//24981863//27371828//22608085 chr8:143352205-143352206(-) m6A 3'UTR//intron       24209618//25456834//24981863//27371828//22608085 chr8:143352315-143352316(-) m6A 3'UTR//intron       24209618//25456834//24981863//27371828//27773536//22608085 chr8:143352333-143352334(-) m6A 3'UTR//intron       24209618//25456834//24981863//27371828//27773536//22608085 chr8:143352520-143352521(-) m6A 3'UTR//intron       25456834//24981863//27371828//27773536//22608085 chr8:143352629-143352630(-) m6A 3'UTR//intron       24209618//25456834//24981863//27371828//27773536//22608085 chr8:143352697-143352698(-) m6A 3'UTR//intron       25456834//24981863//27371828//27773536//22608085 chr8:143352769-143352770(-) m6A 3'UTR//intron       25456834//24981863//27371828//27773536//22608085 chr8:143352818-143352819(-) m6A 3'UTR//intron       25456834//24981863//27371828//27773536 chr8:143352964-143352965(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27371828//27773536 chr8:143352977-143352978(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27371828//27773536 chr8:143353034-143353035(-) m6A CDS//exon//intron       25456834//24981863//27773536 chr8:143361238-143361239(-) m6A exon//intron       24981863//27371828//27773536 chr8:143361274-143361275(-) m6A exon//intron       24981863//27371828//27773536 chr8:143365811-143365812(-) m6A CDS       27371828//27773536 chr8:143395747-143395748(-) m6A CDS//exon       24209618 chr8:143396407-143396408(-) m6A CDS//exon       27773536 chr8:143396418-143396419(-) m6A CDS//exon       27773536 chr8:143399966-143399967(-) m6A CDS//exon       27773536 chr8:143399975-143399976(-) m6A CDS//exon       27773536 chr8:143425380-143425381(-) m6A CDS//intron       27773536 chr8:143425502-143425503(-) m6A CDS//intron       27773536 chr8:143425523-143425524(-) m6A CDS//intron       27773536 chr8:143425674-143425675(-) m6A CDS//intron       25456834//27371828//27773536 chr8:143425760-143425761(-) m6A CDS//intron       25456834//24981863//27371828//27773536 chr8:143427180-143427181(-) m6A CDS//intron       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TSNARE1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B4
Interactor2: TSNARE1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg