Basic Information:

  VIRBase ID:  

VHID00527158

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B4:  MIMAT0012171          TMEM259:  NM_001033026     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B4	TMEM259
miRBase Accession/Entrez ID	MIMAT0012171	91304
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ASBABP1//C19orf6//MBRL//MEMBRALIN//R32184_3

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM259	chr19:1009667-1009668(-) m6A 3'UTR//exon       27773535 chr19:1009754-1009755(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27773536//22575960//22608085 chr19:1010065-1010066(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//27773535//27773536 chr19:1010221-1010222(-) Y 3'UTR//exon       26075521 chr19:1010252-1010253(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960 chr19:1010466-1010467(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:1010581-1010582(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:1010763-1010764(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:1010791-1010792(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:1011228-1011229(-) m6A exon//intron       24284625//27773535 chr19:1011257-1011258(-) m6A exon//intron       24284625//27773535 chr19:1011419-1011420(-) m6A CDS//exon       24284625//27773535 chr19:1011571-1011572(-) m6A CDS//intron       24284625//27773535 chr19:1011634-1011635(-) m6A CDS//exon//intron       24284625 chr19:1011658-1011659(-) m6A CDS//exon//intron       24284625 chr19:1012069-1012070(-) m6A CDS//exon       24284625//27773536//22575960 chr19:1012159-1012160(-) m6A CDS//exon       24284625//27773536 chr19:1012174-1012175(-) m6A CDS//exon       24284625//27773536 chr19:1012186-1012187(-) m6A CDS//exon       24284625//27773536 chr19:1013328-1013329(-) m6A CDS//exon       24981863//26404942//27773535//27371828//27773536//22575960 chr19:1013410-1013411(-) m6A exon//intron       27371828//27773536 chr19:1013611-1013612(-) m6A exon//intron       24981863 chr19:1014203-1014204(-) m6A CDS//exon       - chr19:1014237-1014238(-) Gm CDS//exon       - chr19:1014251-1014252(-) m6A CDS//exon       27773536 chr19:1014268-1014269(-) m6A CDS//exon       27773536 chr19:1017351-1017352(-) m6A CDS//intron       24284625//27773535 chr19:1017356-1017357(-) m6A CDS//intron       24284625//27773535 chr19:1017378-1017379(-) m6A CDS//intron       24284625//27773535 chr19:1020864-1020865(-) Y CDS       26075521 chr19:1021030-1021031(-) m6A 5'UTR       24209618//25456834//24981863//28052920//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM259	Chromatin K562 cells     - Cytosol HeLa-S3 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B4
Interactor2: TMEM259

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg