Detail Information

Basic Information:


  VIRBase ID:  

VHID00521085

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B2RC:           LPIN2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B2RC LPIN2
miRBase
Accession/Entrez ID		 MIMAT0012170 9663
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LPIN2
chr18:3006903(-) A-I      intronic
chr18:2920243(-) A-I      3'UTR
chr18:3006921(-) A-I      intronic
chr18:2950013(-) A-I      intronic
chr18:2950047(-) A-I      intronic
chr18:2922548(-) A-I      intronic
chr18:2922378(-) A-I      intronic
chr18:2922419(-) A-I      intronic
chr18:2949990(-) A-I      intronic
chr18:2949991(-) A-I      intronic
chr18:2922487(-) A-I      intronic
chr18:2922517(-) A-I      intronic
chr18:2920237(-) A-I      3'UTR
chr18:2920194(-) A-I      3'UTR
chr18:3006886(-) A-I      intronic
chr18:3006876(-) A-I      intronic
chr18:2920242(-) A-I      3'UTR
chr18:2920238(-) A-I      3'UTR
chr18:2949879(-) A-I      intronic
chr18:2948914(-) A-I      intronic
chr18:2922478(-) A-I      intronic
chr18:2922457(-) A-I      intronic
chr18:2922441(-) A-I      intronic
chr18:2922401(-) A-I      intronic
chr18:2922365(-) A-I      intronic
chr18:2996655(-) A-I      intronic
chr18:2948923(-) A-I      intronic
chr18:2941900(-) A-I      intronic
chr18:2996180(-) A-I      intronic
chr18:2976987(-) A-I      intronic
chr18:2996210(-) A-I      intronic
chr18:2996214(-) A-I      intronic
chr18:2996216(-) A-I      intronic
chr18:2996229(-) A-I      intronic
chr18:3007406(-) A-I      intronic
chr18:2996656(-) A-I      intronic
chr18:2996704(-) A-I      intronic
chr18:2996747(-) A-I      intronic
chr18:2997094(-) A-I      intronic
chr18:2997124(-) A-I      intronic
chr18:2997414(-) A-I      intronic
chr18:3005639(-) A-I      intronic
chr18:3006471(-) A-I      intronic
chr18:3006516(-) A-I      intronic
chr18:3006946(-) A-I      intronic
chr18:3008222(-) A-I      intronic
chr18:3007370(-) A-I      intronic
chr18:2996094(-) A-I      intronic
chr18:3008210(-) A-I      intronic
chr18:2974186(-) A-I      intronic
chr18:3008889(-) A-I      intronic
chr18:3009519(-) A-I      intronic
chr18:2996093(-) A-I      intronic
chr18:2996134(-) A-I      intronic
chr18:2976988(-) A-I      intronic
chr18:2997173(-) A-I      intronic
chr18:3009233(-) A-I      intronic
chr18:2975471(-) A-I      intronic
chr18:3009575(-) A-I      intronic
chr18:2923385(-) A-I      intronic
chr18:3009141(-) A-I      intronic
chr18:2923306(-) A-I      intronic
chr18:2922384(-) A-I      intronic
chr18:3007227(-) A-I      intronic
chr18:2922476(-) A-I      intronic
chr18:3009248(-) A-I      intronic
chr18:2949087(-) A-I      intronic
chr18:2948936(-) A-I      intronic
chr18:3007267(-) A-I      intronic
chr18:2950016(-) A-I      intronic
chr18:2922468(-) A-I      intronic
chr18:3008919(-) A-I      intronic
chr18:2922502(-) A-I      intronic
chr18:3007238(-) A-I      intronic
chr18:2922483(-) A-I      intronic
chr18:2997118(-) A-I      intronic
chr18:3008999(-) A-I      intronic
chr18:2996171(-) A-I      intronic
chr18:3009285(-) A-I      intronic
chr18:2974935(-) A-I      intronic
chr18:2997153(-) A-I      intronic
chr18:3009643(-) A-I      intronic
chr18:2974894(-) A-I      intronic
chr18:2922438(-) A-I      intronic
chr18:2922493(-) A-I      intronic
chr18:2949846(-) A-I      intronic
chr18:2922388(-) A-I      intronic
chr18:3009208(-) A-I      intronic
chr18:2922454(-) A-I      intronic
chr18:3009022(-) A-I      intronic
chr18:3006965(-) A-I      intronic
chr18:2997175(-) A-I      intronic
chr18:2923331(-) A-I      intronic
chr18:3005236(-) A-I      intronic
chr18:2975613(-) A-I      intronic
chr18:3006646(-) A-I      intronic
chr18:3009615(-) A-I      intronic
chr18:2949987(-) A-I      intronic
chr18:3007233(-) A-I      intronic
chr18:2996300(-) A-I      intronic
chr18:2948879(-) A-I      intronic
chr18:2949983(-) A-I      intronic
chr18:2971962(-) A-I      intronic
chr18:2922328(-) A-I      intronic
chr18:2923227(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LPIN2
chr18:2974882(-) A-I intron -    21960545
chr18:2948980(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LPIN2
chr18:2918319-2918320(-) Y 3'UTR       26075521
chr18:2919686-2919687(-) m6A 3'UTR       24284625//27773535
chr18:2919739-2919740(-) m6A 3'UTR       24284625//25456834//27773535//27371828
chr18:2919859-2919860(-) m6A 3'UTR       24284625//25456834//27773535//27371828
chr18:2919949-2919950(-) m6A 3'UTR       24284625//24981863
chr18:2919955-2919956(-) m6A 3'UTR       24981863
chr18:2925300-2925301(-) m6A CDS       24981863//27773535//27371828
chr18:2927722-2927723(-) m6A CDS       27773535//27371828
chr18:2927783-2927784(-) m6A CDS       27773535//27371828
chr18:2931315-2931316(-) m6A CDS       27773535
chr18:2945832-2945833(-) m6A intron       27773535
chr18:2945848-2945849(-) m6A intron       27773535
chr18:2945886-2945887(-) m6A intron       27773535
chr18:2945894-2945895(-) m6A intron       27773535
chr18:2945919-2945920(-) m6A intron       27773535
chr18:2945944-2945945(-) m6A intron       27773535
chr18:2946046-2946047(-) m6A intron       27773535
chr18:2946076-2946077(-) m6A intron       27773535
chr18:2946099-2946100(-) m6A intron       27773535
chr18:2946198-2946199(-) m6A intron       27773535
chr18:2946213-2946214(-) m6A intron       27773535
chr18:2946233-2946234(-) m6A intron       27773535
chr18:2951106-2951107(-) m6A CDS       24981863//27773535//27371828//22608085
chr18:2951148-2951149(-) m6A CDS       24981863//27773535//27371828//22608085
chr18:2951153-2951154(-) m6A CDS       24981863//27773535//27371828//22608085
chr18:2951209-2951210(-) m6A CDS       24981863//27773535//27371828//22608085
chr18:2951215-2951216(-) m6A CDS       24981863//27773535//27371828//22608085
chr18:2951235-2951236(-) m6A CDS       24981863//27773535//22608085
chr18:2951254-2951255(-) m6A CDS       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LPIN2
Chromatin HCC cell line (HepG2)|K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm HCC cell line (HepG2)|K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B2RC
Interactor2: LPIN2

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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