Basic Information:

  VIRBase ID:  

VHID00519974

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B2RC:  MIMAT0012170          GATM:  NM_001482     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B2RC	GATM
miRBase Accession/Entrez ID	MIMAT0012170	2628
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AGAT//AT//CCDS3//FRTS1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GATM	chr15:45665531(-) A-I      intronic chr15:45665506(-) A-I      intronic chr15:45665502(-) A-I      intronic chr15:45665499(-) A-I      intronic chr15:45662411(-) A-I      intronic chr15:45665451(-) A-I      intronic chr15:45663246(-) A-I      intronic chr15:45667472(-) A-I      intronic chr15:45665589(-) A-I      intronic chr15:45663177(-) A-I      intronic chr15:45663139(-) A-I      intronic chr15:45662536(-) A-I      intronic chr15:45662382(-) A-I      intronic chr15:45662462(-) A-I      intronic chr15:45663100(-) A-I      intronic chr15:45663096(-) A-I      intronic chr15:45663136(-) A-I      intronic chr15:45662527(-) A-I      intronic chr15:45665417(-) A-I      intronic chr15:45662452(-) A-I      intronic chr15:45663176(-) A-I      intronic chr15:45663110(-) A-I      intronic chr15:45662405(-) A-I      intronic chr15:45667354(-) A-I      intronic chr15:45665606(-) A-I      intronic chr15:45662339(-) A-I      intronic chr15:45665528(-) A-I      intronic chr15:45665579(-) A-I      intronic chr15:45663244(-) A-I      intronic chr15:45662446(-) A-I      intronic chr15:45662408(-) A-I      intronic chr15:45663109(-) A-I      intronic chr15:45662491(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GATM	chr15:45663176(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GATM	chr15:45656967-45656968(-) m6A exon//intron       27773535 chr15:45657030-45657031(-) m6A CDS//exon       27773535 chr15:45658285-45658286(-) m6A CDS//exon       27773535 chr15:45661778-45661779(-) m6A exon//intron       27773535 chr15:45668868-45668869(-) m6A 5'UTR//CDS//exon//intron       22575960 chr15:45668898-45668899(-) m6A 5'UTR//CDS//exon//intron       22575960 chr15:45668943-45668944(-) m6A 5'UTR//CDS//exon//intron       22575960 chr15:45668983-45668984(-) m6A 5'UTR//CDS//exon//intron       22575960 chr15:45669007-45669008(-) m6A 5'UTR//CDS//exon//intron       - chr15:45670668-45670669(-) m6A 5'UTR//exon//intron       25456834//24981863 chr15:45670683-45670684(-) m6A 5'UTR//exon//intron       25456834//24981863 chr15:45670707-45670708(-) m6A 5'UTR//exon//intron       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GATM	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B2RC
Interactor2: GATM

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg