Basic Information:

  VIRBase ID:  

VHID00517961

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          SLC35E4:  NM_001318371     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	SLC35E4
miRBase Accession/Entrez ID	MIMAT0001581	339665
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC35E4	chr22:31043326(+) A-I      3'UTR chr22:31043335(+) A-I      3'UTR chr22:31043313(+) A-I      3'UTR chr22:31043334(+) A-I      3'UTR chr22:31036283(+) A-I      intronic chr22:31033404(+) A-I      intronic chr22:31033395(+) A-I      intronic chr22:31033390(+) A-I      intronic chr22:31033289(+) A-I      intronic chr22:31033391(+) A-I      intronic chr22:31038902(+) A-I      intronic chr22:31041439(+) A-I      intronic chr22:31041586(+) A-I      intronic chr22:31037748(+) A-I      intronic chr22:31038617(+) A-I      intronic chr22:31042024(+) A-I      intronic chr22:31037768(+) A-I      intronic chr22:31041740(+) A-I      intronic chr22:31034544(+) A-I      intronic chr22:31034097(+) A-I      intronic chr22:31033591(+) A-I      intronic chr22:31041660(+) A-I      intronic chr22:31041717(+) A-I      intronic chr22:31036270(+) A-I      intronic chr22:31036211(+) A-I      intronic chr22:31038225(+) A-I      intronic chr22:31041967(+) A-I      intronic chr22:31033524(+) A-I      intronic chr22:31043199(+) A-I      3'UTR chr22:31043206(+) A-I      3'UTR chr22:31043329(+) A-I      3'UTR chr22:31043287(+) A-I      3'UTR chr22:31043262(+) A-I      3'UTR chr22:31033454(+) A-I      intronic chr22:31033474(+) A-I      intronic chr22:31041327(+) A-I      intronic chr22:31040685(+) A-I      intronic chr22:31041946(+) A-I      intronic chr22:31034369(+) A-I      intronic chr22:31041435(+) A-I      intronic chr22:31036238(+) A-I      intronic chr22:31041908(+) A-I      intronic chr22:31033293(+) A-I      intronic chr22:31040620(+) A-I      intronic chr22:31038451(+) A-I      intronic chr22:31038649(+) A-I      intronic chr22:31041701(+) A-I      intronic chr22:31033430(+) A-I      intronic chr22:31033364(+) A-I      intronic chr22:31038092(+) A-I      intronic chr22:31033365(+) A-I      intronic chr22:31033342(+) A-I      intronic chr22:31041432(+) A-I      intronic chr22:31036264(+) A-I      intronic chr22:31033334(+) A-I      intronic chr22:31033587(+) A-I      intronic chr22:31041787(+) A-I      intronic chr22:31041503(+) A-I      intronic chr22:31041739(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC35E4	chr22:31032077-31032078(+) m6A 5'UTR       24284625//24981863 chr22:31032150-31032151(+) m6A 5'UTR       24284625//24209618//24981863//22608085 chr22:31032201-31032202(+) m6A 5'UTR       24284625//24209618//24981863//22608085 chr22:31032253-31032254(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:31032271-31032272(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:31032328-31032329(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:31032344-31032345(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:31032372-31032373(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:31032837-31032838(+) m6A CDS       24284625//24981863 chr22:31042995-31042996(+) m6A CDS//intron       25456834//24981863//22608085 chr22:31043019-31043020(+) m6A 3'UTR//intron       25456834//24981863//22608085 chr22:31043098-31043099(+) m6A 3'UTR//intron       25456834//24981863//22608085 chr22:31043366-31043367(+) m6A 3'UTR//intron       24284625//24209618//24981863//22608085 chr22:31043411-31043412(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr22:31043489-31043490(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr22:31043501-31043502(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr22:31043540-31043541(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr22:31058136-31058137(+) m6A 3'UTR//intron       24981863//27773535//22608085 chr22:31058270-31058271(+) m6A 3'UTR//intron       24209618//24981863 chr22:31058280-31058281(+) m6A 3'UTR//intron       24209618//24981863 chr22:31058380-31058381(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr22:31058389-31058390(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr22:31058433-31058434(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr22:31058487-31058488(+) m6A 3'UTR//intron       24284625//24981863 chr22:31058614-31058615(+) m6A 3'UTR//intron       24981863 chr22:31061506-31061507(+) m6A CDS       24981863//22608085 chr22:31063828-31063829(+) m6A 3'UTR       24981863//27371828 chr22:31064142-31064143(+) m6A 3'UTR       - chr22:31064168-31064169(+) m6A 3'UTR       - chr22:31064190-31064191(+) m6A 3'UTR       - chr22:31064265-31064266(+) m6A 3'UTR       - chr22:31064322-31064323(+) m6A 3'UTR       - chr22:31064330-31064331(+) m6A 3'UTR       - chr22:31064348-31064349(+) m6A 3'UTR       - chr22:31064358-31064359(+) m6A 3'UTR       - chr22:31064378-31064379(+) m6A 3'UTR       - chr22:31064461-31064462(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC35E4	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: SLC35E4

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.