Basic Information:

  VIRBase ID:  

VHID00517530

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          SGMS1:  NM_147156     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	SGMS1
miRBase Accession/Entrez ID	MIMAT0001581	259230
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	hmob33//MOB//MOB1//SMS1//TMEM23

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SGMS1	chr10:52126406(-) A-I      intronic chr10:52126451(-) A-I      intronic chr10:52125429(-) A-I      intronic chr10:52125444(-) A-I      intronic chr10:52125445(-) A-I      intronic chr10:52125446(-) A-I      intronic chr10:52125456(-) A-I      intronic chr10:52125468(-) A-I      intronic chr10:52125617(-) A-I      intronic chr10:52125619(-) A-I      intronic chr10:52125622(-) A-I      intronic chr10:52126442(-) A-I      intronic chr10:52125423(-) A-I      intronic chr10:52125422(-) A-I      intronic chr10:52125410(-) A-I      intronic chr10:52125612(-) A-I      intronic chr10:52125401(-) A-I      intronic chr10:52126427(-) A-I      intronic chr10:52125626(-) A-I      intronic chr10:52125646(-) A-I      intronic chr10:52125652(-) A-I      intronic chr10:52125621(-) A-I      intronic chr10:52125641(-) A-I      intronic chr10:52125408(-) A-I      intronic chr10:52125628(-) A-I      intronic chr10:52125682(-) A-I      intronic chr10:52125270(-) A-I      intronic chr10:52125379(-) A-I      intronic chr10:52125404(-) A-I      intronic chr10:52125407(-) A-I      intronic chr10:52125399(-) A-I      intronic chr10:52166563(-) A-I      intronic chr10:52376133(-) A-I      intronic chr10:52279947(-) A-I      intronic chr10:52168553(-) A-I      intronic chr10:52168552(-) A-I      intronic chr10:52251099(-) A-I      intronic chr10:52166635(-) A-I      intronic chr10:52253650(-) A-I      intronic chr10:52166533(-) A-I      intronic chr10:52140770(-) A-I      intronic chr10:52380780(-) A-I      intronic chr10:52140668(-) A-I      intronic chr10:52140620(-) A-I      intronic chr10:52130457(-) A-I      intronic chr10:52253654(-) A-I      intronic chr10:52380723(-) A-I      intronic chr10:52129086(-) A-I      intronic chr10:52128273(-) A-I      intronic chr10:52166765(-) A-I      intronic chr10:52253669(-) A-I      intronic chr10:52280903(-) A-I      intronic chr10:52253737(-) A-I      intronic chr10:52128389(-) A-I      intronic chr10:52288416(-) A-I      intronic chr10:52118449(-) A-I      intronic chr10:52118373(-) A-I      intronic chr10:52253747(-) A-I      intronic chr10:52280916(-) A-I      intronic chr10:52128281(-) A-I      intronic chr10:52144483(-) A-I      intronic chr10:52296075(-) A-I      intronic chr10:52257442(-) A-I      intronic chr10:52251077(-) A-I      intronic chr10:52118240(-) A-I      intronic chr10:52174078(-) A-I      intronic chr10:52380931(-) A-I      intronic chr10:52380860(-) A-I      intronic chr10:52253636(-) A-I      intronic chr10:52257470(-) A-I      intronic chr10:52375916(-) A-I      intronic chr10:52117822(-) A-I      intronic chr10:52117796(-) A-I      intronic chr10:52090217(-) A-I      intronic chr10:52377682(-) A-I      intronic chr10:52376168(-) A-I      intronic chr10:52128284(-) A-I      intronic chr10:52118349(-) A-I      intronic chr10:52376162(-) A-I      intronic chr10:52160335(-) A-I      intronic chr10:52376041(-) A-I      intronic chr10:52355074(-) A-I      intronic chr10:52355057(-) A-I      intronic chr10:52247834(-) A-I      intronic chr10:52355008(-) A-I      intronic chr10:52347210(-) A-I      intronic chr10:52347208(-) A-I      intronic chr10:52344257(-) A-I      intronic chr10:52293775(-) A-I      intronic chr10:52257406(-) A-I      intronic chr10:52344215(-) A-I      intronic chr10:52344196(-) A-I      intronic chr10:52335301(-) A-I      intronic chr10:52335302(-) A-I      intronic chr10:52335163(-) A-I      intronic chr10:52295984(-) A-I      intronic chr10:52295976(-) A-I      intronic chr10:52295948(-) A-I      intronic chr10:52295356(-) A-I      intronic chr10:52295334(-) A-I      intronic chr10:52295333(-) A-I      intronic chr10:52295307(-) A-I      intronic chr10:52295306(-) A-I      intronic chr10:52295264(-) A-I      intronic chr10:52295263(-) A-I      intronic chr10:52295237(-) A-I      intronic chr10:52294916(-) A-I      intronic chr10:52294811(-) A-I      intronic chr10:52221953(-) A-I      intronic chr10:52293698(-) A-I      intronic chr10:52288429(-) A-I      intronic chr10:52166675(-) A-I      intronic chr10:52380923(-) A-I      intronic chr10:52349095(-) A-I      intronic chr10:52253829(-) A-I      intronic chr10:52253695(-) A-I      intronic chr10:52366747(-) A-I      intronic chr10:52377605(-) A-I      intronic chr10:52257478(-) A-I      intronic chr10:52380778(-) A-I      intronic chr10:52104440(-) A-I      intronic chr10:52140125(-) A-I      intronic chr10:52200467(-) A-I      intronic chr10:52207925(-) A-I      intronic chr10:52219328(-) A-I      intronic chr10:52221939(-) A-I      intronic chr10:52221965(-) A-I      intronic chr10:52247859(-) A-I      intronic chr10:52247896(-) A-I      intronic chr10:52247997(-) A-I      intronic chr10:52251053(-) A-I      intronic chr10:52128214(-) A-I      intronic chr10:52377681(-) A-I      intronic chr10:52094996(-) A-I      intronic chr10:52187126(-) A-I      intronic chr10:52377728(-) A-I      intronic chr10:52254967(-) A-I      intronic chr10:52377482(-) A-I      intronic chr10:52347321(-) A-I      intronic chr10:52294977(-) A-I      intronic chr10:52140106(-) A-I      intronic chr10:52254889(-) A-I      intronic chr10:52166758(-) A-I      intronic chr10:52377710(-) A-I      intronic chr10:52168146(-) A-I      intronic chr10:52250998(-) A-I      intronic chr10:52168554(-) A-I      intronic chr10:52380854(-) A-I      intronic chr10:52140884(-) A-I      intronic chr10:52253736(-) A-I      intronic chr10:52129182(-) A-I      intronic chr10:52295998(-) A-I      intronic chr10:52295338(-) A-I      intronic chr10:52380714(-) A-I      intronic chr10:52160302(-) A-I      intronic chr10:52140681(-) A-I      intronic chr10:52372657(-) A-I      intronic chr10:52159713(-) A-I      intronic chr10:52376182(-) A-I      intronic chr10:52140839(-) A-I      intronic chr10:52380726(-) A-I      intronic chr10:52377705(-) A-I      intronic chr10:52200602(-) A-I      intronic chr10:52168171(-) A-I      intronic chr10:52247912(-) A-I      intronic chr10:52376025(-) A-I      intronic chr10:52247841(-) A-I      intronic chr10:52251075(-) A-I      intronic chr10:52380687(-) A-I      intronic chr10:52349191(-) A-I      intronic chr10:52280662(-) A-I      intronic chr10:52159775(-) A-I      intronic chr10:52372639(-) A-I      intronic chr10:52295246(-) A-I      intronic chr10:52280010(-) A-I      intronic chr10:52335272(-) A-I      intronic chr10:52348592(-) A-I      intronic chr10:52159756(-) A-I      intronic chr10:52280872(-) A-I      intronic chr10:52380741(-) A-I      intronic chr10:52305257(-) A-I      intronic chr10:52348764(-) A-I      intronic chr10:52295993(-) A-I      intronic chr10:52293748(-) A-I      intronic chr10:52140837(-) A-I      intronic chr10:52347327(-) A-I      intronic chr10:52380699(-) A-I      intronic chr10:52354993(-) A-I      intronic chr10:52139975(-) A-I      intronic chr10:52148340(-) A-I      intronic chr10:52253686(-) A-I      intronic chr10:52128190(-) A-I      intronic chr10:52380893(-) A-I      intronic chr10:52349265(-) A-I      intronic chr10:52293765(-) A-I      intronic chr10:52118448(-) A-I      intronic chr10:52130465(-) A-I      intronic chr10:52166603(-) A-I      intronic chr10:52348575(-) A-I      intronic chr10:52377582(-) A-I      intronic chr10:52092563(-) A-I      intronic chr10:52294857(-) A-I      intronic chr10:52128208(-) A-I      intronic chr10:52247873(-) A-I      intronic chr10:52271283(-) A-I      intronic chr10:52125274(-) A-I      intronic chr10:52125486(-) A-I      intronic chr10:52125683(-) A-I      intronic chr10:52271492(-) A-I      intronic chr10:52160332(-) A-I      intronic chr10:52125342(-) A-I      intronic chr10:52144434(-) A-I      intronic chr10:52074597(-) A-I      intronic chr10:52295902(-) A-I      intronic chr10:52265784(-) A-I      intronic chr10:52335702(-) A-I      intronic chr10:52160349(-) A-I      intronic chr10:52168660(-) A-I      intronic chr10:52125469(-) A-I      intronic chr10:52125473(-) A-I      intronic chr10:52082264(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SGMS1	chr10:52125274(-) A-G intron -    22484847 chr10:52125342(-) A-G intron -    22484847 chr10:52125469(-) A-G intron -    22484847 chr10:52125473(-) A-G intron -    22484847 chr10:52125486(-) A-G intron -    22484847 chr10:52125683(-) A-G intron -    22484847 chr10:52166563(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SGMS1	chr10:52066529-52066530(-) m6A 3'UTR       27773535 chr10:52066720-52066721(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52066731-52066732(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52066825-52066826(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52066854-52066855(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52066877-52066878(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr10:52067055-52067056(-) m6A 3'UTR//CDS       24284625//24981863//22608085 chr10:52067777-52067778(-) m6A 3'UTR//CDS       24981863 chr10:52100149-52100150(-) m6A 3'UTR//5'UTR//intron       24981863 chr10:52100162-52100163(-) m6A 3'UTR//5'UTR//intron       24981863 chr10:52100217-52100218(-) m6A 3'UTR//5'UTR//intron       24981863 chr10:52102664-52102665(-) m6A 3'UTR//intron       - chr10:52102703-52102704(-) m6A 3'UTR//intron       - chr10:52103198-52103199(-) m6A 3'UTR//intron       24981863//27773535 chr10:52103286-52103287(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:52103362-52103363(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr10:52103471-52103472(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103508-52103509(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103565-52103566(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103605-52103606(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103678-52103679(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103689-52103690(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103736-52103737(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103770-52103771(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103833-52103834(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr10:52103896-52103897(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103931-52103932(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52103952-52103953(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52104000-52104001(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52104022-52104023(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr10:52104045-52104046(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr10:52104052-52104053(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr10:52177825-52177826(-) m6A exon//intron       24284625//24981863//27773535 chr10:52177847-52177848(-) m6A exon//intron       24284625//24981863//27773535 chr10:52177859-52177860(-) m6A exon//intron       24284625//24981863//27773535 chr10:52177875-52177876(-) m6A exon//intron       27773535 chr10:52178000-52178001(-) m6A exon//intron       27773536 chr10:52178009-52178010(-) m6A exon//intron       27773536 chr10:52178193-52178194(-) m6A exon//intron       24981863 chr10:52279619-52279620(-) m6A 5'UTR//exon       27773535 chr10:52279633-52279634(-) m6A 5'UTR//exon       27773535 chr10:52279651-52279652(-) m6A 5'UTR//exon       27773535 chr10:52349929-52349930(-) m6A 5'UTR//exon       27773535 chr10:52383620-52383621(-) m6A 5'UTR//intron       24284625//24981863//27371828//27773536 chr10:52383731-52383732(-) m6A 5'UTR//intron       24981863//27773536 chr10:52384689-52384690(-) m6A exon//intron       24981863//27773536 chr10:52384863-52384864(-) m6A exon       24284625//25456834 chr10:52384898-52384899(-) m6A exon       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SGMS1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: SGMS1

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.