Basic Information:

  VIRBase ID:  

VHID00516817

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          WBP2NL:  NM_152613     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	WBP2NL
miRBase Accession/Entrez ID	MIMAT0001581	164684
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	GRAMD7//PAWP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	WBP2NL	chr22:42412259(+) A-I      intronic chr22:42412223(+) A-I      intronic chr22:42412237(+) A-I      intronic chr22:42412224(+) A-I      intronic chr22:42400777(+) A-I      intronic chr22:42410269(+) A-I      intronic chr22:42410199(+) A-I      intronic chr22:42410177(+) A-I      intronic chr22:42410060(+) A-I      intronic chr22:42409380(+) A-I      intronic chr22:42409191(+) A-I      intronic chr22:42409187(+) A-I      intronic chr22:42408902(+) A-I      intronic chr22:42407916(+) A-I      intronic chr22:42407276(+) A-I      intronic chr22:42405109(+) A-I      intronic chr22:42404292(+) A-I      intronic chr22:42402498(+) A-I      intronic chr22:42402489(+) A-I      intronic chr22:42402354(+) A-I      intronic chr22:42401371(+) A-I      intronic chr22:42400779(+) A-I      intronic chr22:42400477(+) A-I      intronic chr22:42400467(+) A-I      intronic chr22:42400133(+) A-I      intronic chr22:42400080(+) A-I      intronic chr22:42398449(+) A-I      intronic chr22:42396760(+) A-I      intronic chr22:42396755(+) A-I      intronic chr22:42396754(+) A-I      intronic chr22:42396724(+) A-I      intronic chr22:42407351(+) A-I      intronic chr22:42413220(+) A-I      intronic chr22:42415204(+) A-I      intronic chr22:42415185(+) A-I      intronic chr22:42414136(+) A-I      intronic chr22:42413784(+) A-I      intronic chr22:42413237(+) A-I      intronic chr22:42413232(+) A-I      intronic chr22:42412090(+) A-I      intronic chr22:42412089(+) A-I      intronic chr22:42412085(+) A-I      intronic chr22:42410492(+) A-I      intronic chr22:42410293(+) A-I      intronic chr22:42398903(+) A-I      ncRNA chr22:42400351(+) A-I      intronic chr22:42413329(+) A-I      intronic chr22:42401006(+) A-I      intronic chr22:42410499(+) A-I      intronic chr22:42419330(+) A-I      intronic chr22:42409121(+) A-I      intronic chr22:42413302(+) A-I      intronic chr22:42415131(+) A-I      intronic chr22:42395679(+) A-I      intronic chr22:42415015(+) A-I      intronic chr22:42404439(+) A-I      intronic chr22:42413163(+) A-I      intronic chr22:42414059(+) A-I      intronic chr22:42413155(+) A-I      intronic chr22:42400814(+) A-I      intronic chr22:42415078(+) A-I      intronic chr22:42409681(+) A-I      intronic chr22:42400201(+) A-I      intronic chr22:42395611(+) A-I      intronic chr22:42413760(+) A-I      intronic chr22:42400396(+) A-I      intronic chr22:42400766(+) A-I      intronic chr22:42400772(+) A-I      intronic chr22:42404473(+) A-I      intronic chr22:42414197(+) A-I      intronic chr22:42409256(+) A-I      intronic chr22:42402351(+) A-I      intronic chr22:42407397(+) A-I      intronic chr22:42406804(+) A-I      intronic chr22:42409995(+) A-I      intronic chr22:42409296(+) A-I      intronic chr22:42401478(+) A-I      intronic chr22:42415213(+) A-I      intronic chr22:42395591(+) A-I      intronic chr22:42414023(+) A-I      intronic chr22:42400439(+) A-I      intronic chr22:42402382(+) A-I      intronic chr22:42404491(+) A-I      intronic chr22:42407509(+) A-I      intronic chr22:42396745(+) A-I      intronic chr22:42409201(+) A-I      intronic chr22:42400089(+) A-I      intronic chr22:42410420(+) A-I      intronic chr22:42414231(+) A-I      intronic chr22:42415104(+) A-I      intronic chr22:42415145(+) A-I      intronic chr22:42404485(+) A-I      intronic chr22:42410160(+) A-I      intronic chr22:42409224(+) A-I      intronic chr22:42415177(+) A-I      intronic chr22:42409969(+) A-I      intronic chr22:42402406(+) A-I      intronic chr22:42413787(+) A-I      intronic chr22:42415146(+) A-I      intronic chr22:42401163(+) A-I      intronic chr22:42414971(+) A-I      intronic chr22:42410395(+) A-I      intronic chr22:42410342(+) A-I      intronic chr22:42400451(+) A-I      intronic chr22:42395577(+) A-I      intronic chr22:42414065(+) A-I      intronic chr22:42409713(+) A-I      intronic chr22:42400156(+) A-I      intronic chr22:42400047(+) A-I      intronic chr22:42410048(+) A-I      intronic chr22:42410505(+) A-I      intronic chr22:42402390(+) A-I      intronic chr22:42412086(+) A-I      intronic chr22:42400537(+) A-I      intronic chr22:42400448(+) A-I      intronic chr22:42412125(+) A-I      intronic chr22:42404391(+) A-I      intronic chr22:42400126(+) A-I      intronic chr22:42415176(+) A-I      intronic chr22:42408741(+) A-I      intronic chr22:42404371(+) A-I      intronic chr22:42404356(+) A-I      intronic chr22:42415070(+) A-I      intronic chr22:42413375(+) A-I      intronic chr22:42400656(+) A-I      intronic chr22:42408742(+) A-I      intronic chr22:42400808(+) A-I      intronic chr22:42402448(+) A-I      intronic chr22:42415046(+) A-I      intronic chr22:42409641(+) A-I      intronic chr22:42408875(+) A-I      intronic chr22:42398556(+) A-I      intronic chr22:42409718(+) A-I      intronic chr22:42414972(+) A-I      intronic chr22:42410414(+) A-I      intronic chr22:42400419(+) A-I      intronic chr22:42400543(+) A-I      intronic chr22:42399101(+) A-I      ncRNA

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	WBP2NL	chr22:42408713(+) A-G intron -    22484847 chr22:42400419(+) A-G intron -    22484847 chr22:42400451(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	WBP2NL	chr22:42394850-42394851(+) m6A CDS//exon       - chr22:42398671-42398672(+) m6A exon//intron       24981863 chr22:42398727-42398728(+) m6A exon//intron       24284625 chr22:42398746-42398747(+) m6A exon//intron       24284625 chr22:42398783-42398784(+) m6A exon//intron       24284625 chr22:42398847-42398848(+) m6A exon//intron       - chr22:42398860-42398861(+) m6A exon//intron       - chr22:42398942-42398943(+) m6A exon//intron       - chr22:42398965-42398966(+) m6A exon//intron       - chr22:42399058-42399059(+) m6A exon//intron       24284625 chr22:42399081-42399082(+) m6A exon//intron       24284625 chr22:42399107-42399108(+) m6A exon//intron       24284625 chr22:42399152-42399153(+) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	WBP2NL	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: WBP2NL

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.