Basic Information:

  VIRBase ID:  

VHID00516710

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          TMTC3:  NM_001366583     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	TMTC3
miRBase Accession/Entrez ID	MIMAT0001581	160418
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	LIS8//SMILE

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMTC3	chr12:88557908(+) A-I      intronic chr12:88557899(+) A-I      intronic chr12:88556882(+) A-I      intronic chr12:88556709(+) A-I      intronic chr12:88556895(+) A-I      intronic chr12:88557711(+) A-I      intronic chr12:88556711(+) A-I      intronic chr12:88557812(+) A-I      intronic chr12:88557916(+) A-I      intronic chr12:88556779(+) A-I      intronic chr12:88556757(+) A-I      intronic chr12:88556749(+) A-I      intronic chr12:88557734(+) A-I      intronic chr12:88585561(+) A-I      intronic chr12:88557814(+) A-I      intronic chr12:88552842(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TMTC3	chr12:88557814(+) A-G intron -    22484847 chr12:88556749(+) A-G intron -    22484847 chr12:88556757(+) A-G intron -    22484847 chr12:88556779(+) A-G intron -    22484847 chr12:88557734(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMTC3	chr12:88536086-88536087(+) m6A 5'UTR       25456834//24981863 chr12:88536116-88536117(+) m6A 5'UTR       25456834//24981863 chr12:88536155-88536156(+) m6A 5'UTR       25456834//24981863 chr12:88536177-88536178(+) m6A 5'UTR//intron       25456834//24981863 chr12:88586407-88586408(+) m6A CDS       24981863//26404942 chr12:88586451-88586452(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:88586500-88586501(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:88586509-88586510(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:88586529-88586530(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:88586548-88586549(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:88586566-88586567(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:88588624-88588625(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:88588630-88588631(+) m6A CDS       24284625//24981863//26404942//22608085 chr12:88588731-88588732(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr12:88588823-88588824(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr12:88588911-88588912(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr12:88589002-88589003(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr12:88589037-88589038(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr12:88589069-88589070(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr12:88589242-88589243(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr12:88589261-88589262(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr12:88589296-88589297(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:88589324-88589325(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:88589336-88589337(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:88589346-88589347(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:88589389-88589390(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr12:88589459-88589460(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr12:88589577-88589578(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr12:88589765-88589766(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMTC3	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: TMTC3

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.