Basic Information:

  VIRBase ID:  

VHID00516365

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          ANKRD29:  NM_173505     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	ANKRD29
miRBase Accession/Entrez ID	MIMAT0001581	147463
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ANKRD29	chr18:21230288(-) A-I      intronic chr18:21230292(-) A-I      intronic chr18:21209034(-) A-I      intronic chr18:21209037(-) A-I      intronic chr18:21230307(-) A-I      intronic chr18:21230287(-) A-I      intronic chr18:21190777(-) A-I      intronic chr18:21190773(-) A-I      intronic chr18:21186191(-) A-I      intronic chr18:21193829(-) A-I      intronic chr18:21186184(-) A-I      intronic chr18:21193826(-) A-I      intronic chr18:21193812(-) A-I      intronic chr18:21193281(-) A-I      intronic chr18:21186183(-) A-I      intronic chr18:21186160(-) A-I      intronic chr18:21186152(-) A-I      intronic chr18:21193248(-) A-I      intronic chr18:21185112(-) A-I      intronic chr18:21185073(-) A-I      intronic chr18:21227663(-) A-I      intronic chr18:21185104(-) A-I      intronic chr18:21185101(-) A-I      intronic chr18:21185086(-) A-I      intronic chr18:21182227(-) A-I      intronic chr18:21233728(-) A-I      intronic chr18:21233762(-) A-I      intronic chr18:21182174(-) A-I      intronic chr18:21182169(-) A-I      intronic chr18:21193835(-) A-I      intronic chr18:21194154(-) A-I      intronic chr18:21194172(-) A-I      intronic chr18:21194208(-) A-I      intronic chr18:21195083(-) A-I      intronic chr18:21198417(-) A-I      intronic chr18:21209021(-) A-I      intronic chr18:21209024(-) A-I      intronic chr18:21193245(-) A-I      intronic chr18:21186765(-) A-I      intronic chr18:21191563(-) A-I      intronic chr18:21198500(-) A-I      intronic chr18:21225456(-) A-I      intronic chr18:21225476(-) A-I      intronic chr18:21193242(-) A-I      intronic chr18:21191517(-) A-I      intronic chr18:21182165(-) A-I      intronic chr18:21190862(-) A-I      intronic chr18:21190860(-) A-I      intronic chr18:21190813(-) A-I      intronic chr18:21190789(-) A-I      intronic chr18:21185078(-) A-I      intronic chr18:21233730(-) A-I      intronic chr18:21233729(-) A-I      intronic chr18:21233717(-) A-I      intronic chr18:21233714(-) A-I      intronic chr18:21233713(-) A-I      intronic chr18:21233712(-) A-I      intronic chr18:21233695(-) A-I      intronic chr18:21230324(-) A-I      intronic chr18:21209031(-) A-I      intronic chr18:21197153(-) A-I      intronic chr18:21198342(-) A-I      intronic chr18:21202695(-) A-I      intronic chr18:21202704(-) A-I      intronic chr18:21202820(-) A-I      intronic chr18:21203879(-) A-I      intronic chr18:21203880(-) A-I      intronic chr18:21208572(-) A-I      intronic chr18:21211409(-) A-I      intronic chr18:21214400(-) A-I      intronic chr18:21233307(-) A-I      intronic chr18:21233767(-) A-I      intronic chr18:21233772(-) A-I      intronic chr18:21238167(-) A-I      intronic chr18:21238172(-) A-I      intronic chr18:21239620(-) A-I      intronic chr18:21239621(-) A-I      intronic chr18:21239625(-) A-I      intronic chr18:21239671(-) A-I      intronic chr18:21239940(-) A-I      intronic chr18:21240607(-) A-I      intronic chr18:21241453(-) A-I      intronic chr18:21241534(-) A-I      intronic chr18:21184591(-) A-I      intronic chr18:21186374(-) A-I      intronic chr18:21181766(-) A-I      intronic chr18:21181780(-) A-I      intronic chr18:21181912(-) A-I      intronic chr18:21182061(-) A-I      intronic chr18:21182086(-) A-I      intronic chr18:21182189(-) A-I      intronic chr18:21182667(-) A-I      intronic chr18:21182711(-) A-I      intronic chr18:21183392(-) A-I      intronic chr18:21183393(-) A-I      intronic chr18:21183394(-) A-I      intronic chr18:21183449(-) A-I      intronic chr18:21183473(-) A-I      intronic chr18:21183475(-) A-I      intronic chr18:21183545(-) A-I      intronic chr18:21183859(-) A-I      intronic chr18:21183864(-) A-I      intronic chr18:21183867(-) A-I      intronic chr18:21183915(-) A-I      intronic chr18:21183918(-) A-I      intronic chr18:21183947(-) A-I      intronic chr18:21183971(-) A-I      intronic chr18:21184683(-) A-I      intronic chr18:21184696(-) A-I      intronic chr18:21184698(-) A-I      intronic chr18:21184954(-) A-I      intronic chr18:21184970(-) A-I      intronic chr18:21184974(-) A-I      intronic chr18:21184999(-) A-I      intronic chr18:21185009(-) A-I      intronic chr18:21185130(-) A-I      intronic chr18:21186379(-) A-I      intronic chr18:21186728(-) A-I      intronic chr18:21188830(-) A-I      intronic chr18:21188946(-) A-I      intronic chr18:21188975(-) A-I      intronic chr18:21188982(-) A-I      intronic chr18:21189006(-) A-I      intronic chr18:21189019(-) A-I      intronic chr18:21190251(-) A-I      intronic chr18:21190293(-) A-I      intronic chr18:21190332(-) A-I      intronic chr18:21190359(-) A-I      intronic chr18:21190360(-) A-I      intronic chr18:21190373(-) A-I      intronic chr18:21190390(-) A-I      intronic chr18:21190776(-) A-I      intronic chr18:21190783(-) A-I      intronic chr18:21190805(-) A-I      intronic chr18:21190812(-) A-I      intronic chr18:21190823(-) A-I      intronic chr18:21190847(-) A-I      intronic chr18:21190886(-) A-I      intronic chr18:21190890(-) A-I      intronic chr18:21191468(-) A-I      intronic chr18:21191527(-) A-I      intronic chr18:21191586(-) A-I      intronic chr18:21191602(-) A-I      intronic chr18:21193329(-) A-I      intronic chr18:21193344(-) A-I      intronic chr18:21193624(-) A-I      intronic chr18:21193740(-) A-I      intronic chr18:21193741(-) A-I      intronic chr18:21193743(-) A-I      intronic chr18:21193813(-) A-I      intronic chr18:21193818(-) A-I      intronic chr18:21193872(-) A-I      intronic chr18:21193875(-) A-I      intronic chr18:21193960(-) A-I      intronic chr18:21194062(-) A-I      intronic chr18:21194107(-) A-I      intronic chr18:21194221(-) A-I      intronic chr18:21194266(-) A-I      intronic chr18:21194276(-) A-I      intronic chr18:21194540(-) A-I      intronic chr18:21194606(-) A-I      intronic chr18:21195070(-) A-I      intronic chr18:21195078(-) A-I      intronic chr18:21195097(-) A-I      intronic chr18:21195144(-) A-I      intronic chr18:21195488(-) A-I      intronic chr18:21195592(-) A-I      intronic chr18:21195593(-) A-I      intronic chr18:21195602(-) A-I      intronic chr18:21196321(-) A-I      intronic chr18:21196418(-) A-I      intronic chr18:21197137(-) A-I      intronic chr18:21194263(-) A-I      intronic chr18:21195038(-) A-I      intronic chr18:21194305(-) A-I      intronic chr18:21184033(-) A-I      intronic chr18:21194150(-) A-I      intronic chr18:21194307(-) A-I      intronic chr18:21190815(-) A-I      intronic chr18:21190915(-) A-I      intronic chr18:21190439(-) A-I      intronic chr18:21210223(-) A-I      intronic chr18:21234418(-) A-I      intronic chr18:21185580(-) A-I      intronic chr18:21193702(-) A-I      intronic chr18:21239452(-) A-I      intronic chr18:21194298(-) A-I      intronic chr18:21181888(-) A-I      intronic chr18:21190845(-) A-I      intronic chr18:21196282(-) A-I      intronic chr18:21190747(-) A-I      intronic chr18:21193208(-) A-I      intronic chr18:21190769(-) A-I      intronic chr18:21194163(-) A-I      intronic chr18:21186515(-) A-I      intronic chr18:21184623(-) A-I      intronic chr18:21217635(-) A-I      intronic chr18:21216158(-) A-I      intronic chr18:21227549(-) A-I      intronic chr18:21193597(-) A-I      intronic chr18:21183425(-) A-I      intronic chr18:21186776(-) A-I      intronic chr18:21181762(-) A-I      intronic chr18:21181788(-) A-I      intronic chr18:21189031(-) A-I      intronic chr18:21196454(-) A-I      intronic chr18:21184100(-) A-I      intronic chr18:21181840(-) A-I      intronic chr18:21186204(-) A-I      intronic chr18:21194277(-) A-I      intronic chr18:21186716(-) A-I      intronic chr18:21241621(-) A-I      intronic chr18:21195029(-) A-I      intronic chr18:21186172(-) A-I      intronic chr18:21195648(-) A-I      intronic chr18:21186512(-) A-I      intronic chr18:21193275(-) A-I      intronic chr18:21230207(-) A-I      intronic chr18:21194526(-) A-I      intronic chr18:21195200(-) A-I      intronic chr18:21194539(-) A-I      intronic chr18:21181855(-) A-I      intronic chr18:21186707(-) A-I      intronic chr18:21185016(-) A-I      intronic chr18:21195245(-) A-I      intronic chr18:21183904(-) A-I      intronic chr18:21197155(-) A-I      intronic chr18:21182279(-) A-I      intronic chr18:21195511(-) A-I      intronic chr18:21234050(-) A-I      intronic chr18:21193963(-) A-I      intronic chr18:21193675(-) A-I      intronic chr18:21196327(-) A-I      intronic chr18:21190838(-) A-I      intronic chr18:21215164(-) A-I      intronic chr18:21184038(-) A-I      intronic chr18:21198335(-) A-I      intronic chr18:21196371(-) A-I      intronic chr18:21196338(-) A-I      intronic chr18:21195649(-) A-I      intronic chr18:21186340(-) A-I      intronic chr18:21238214(-) A-I      intronic chr18:21194147(-) A-I      intronic chr18:21197105(-) A-I      intronic chr18:21182218(-) A-I      intronic chr18:21194077(-) A-I      intronic chr18:21194158(-) A-I      intronic chr18:21193339(-) A-I      intronic chr18:21186159(-) A-I      intronic chr18:21195169(-) A-I      intronic chr18:21194220(-) A-I      intronic chr18:21185136(-) A-I      intronic chr18:21198481(-) A-I      intronic chr18:21196310(-) A-I      intronic chr18:21209109(-) A-I      intronic chr18:21194102(-) A-I      intronic chr18:21193685(-) A-I      intronic chr18:21193692(-) A-I      intronic chr18:21183985(-) A-I      intronic chr18:21190330(-) A-I      intronic chr18:21186816(-) A-I      intronic chr18:21185587(-) A-I      intronic chr18:21196394(-) A-I      intronic chr18:21188839(-) A-I      intronic chr18:21198383(-) A-I      intronic chr18:21181790(-) A-I      intronic chr18:21194244(-) A-I      intronic chr18:21195191(-) A-I      intronic chr18:21193202(-) A-I      intronic chr18:21185258(-) A-I      intronic chr18:21195064(-) A-I      intronic chr18:21188902(-) A-I      intronic chr18:21217634(-) A-I      intronic chr18:21193337(-) A-I      intronic chr18:21193782(-) A-I      intronic chr18:21181731(-) A-I      intronic chr18:21193757(-) A-I      intronic chr18:21194219(-) A-I      intronic chr18:21234444(-) A-I      intronic chr18:21198433(-) A-I      intronic chr18:21202627(-) A-I      intronic chr18:21190932(-) A-I      intronic chr18:21190248(-) A-I      intronic chr18:21194164(-) A-I      intronic chr18:21240740(-) A-I      intronic chr18:21238360(-) A-I      intronic chr18:21194548(-) A-I      intronic chr18:21183380(-) A-I      intronic chr18:21181902(-) A-I      intronic chr18:21198492(-) A-I      intronic chr18:21186493(-) A-I      intronic chr18:21183414(-) A-I      intronic chr18:21240764(-) A-I      intronic chr18:21195244(-) A-I      intronic chr18:21195069(-) A-I      intronic chr18:21182267(-) A-I      intronic chr18:21198341(-) A-I      intronic chr18:21194064(-) A-I      intronic chr18:21225537(-) A-I      intronic chr18:21195023(-) A-I      intronic chr18:21194573(-) A-I      intronic chr18:21184643(-) A-I      intronic chr18:21183874(-) A-I      intronic chr18:21208540(-) A-I      intronic chr18:21209230(-) A-I      intronic chr18:21184765(-) A-I      intronic chr18:21186178(-) A-I      intronic chr18:21195138(-) A-I      intronic chr18:21193204(-) A-I      intronic chr18:21184689(-) A-I      intronic chr18:21193636(-) A-I      intronic chr18:21197160(-) A-I      intronic chr18:21196445(-) A-I      intronic chr18:21194056(-) A-I      intronic chr18:21214540(-) A-I      intronic chr18:21186214(-) A-I      intronic chr18:21190916(-) A-I      intronic chr18:21182666(-) A-I      intronic chr18:21197020(-) A-I      intronic chr18:21196300(-) A-I      intronic chr18:21198445(-) A-I      intronic chr18:21197017(-) A-I      intronic chr18:21215176(-) A-I      intronic chr18:21182639(-) A-I      intronic chr18:21230380(-) A-I      intronic chr18:21186818(-) A-I      intronic chr18:21198423(-) A-I      intronic chr18:21191482(-) A-I      intronic chr18:21196345(-) A-I      intronic chr18:21241411(-) A-I      intronic chr18:21186168(-) A-I      intronic chr18:21195172(-) A-I      intronic chr18:21227666(-) A-I      intronic chr18:21216473(-) A-I      intronic chr18:21186746(-) A-I      intronic chr18:21185067(-) A-I      intronic chr18:21230350(-) A-I      intronic chr18:21188958(-) A-I      intronic chr18:21194267(-) A-I      intronic chr18:21190766(-) A-I      intronic chr18:21233988(-) A-I      intronic chr18:21196429(-) A-I      intronic chr18:21191485(-) A-I      intronic chr18:21196412(-) A-I      intronic chr18:21238364(-) A-I      intronic chr18:21186450(-) A-I      intronic chr18:21184688(-) A-I      intronic chr18:21181887(-) A-I      intronic chr18:21191566(-) A-I      intronic chr18:21195193(-) A-I      intronic chr18:21209224(-) A-I      intronic chr18:21241425(-) A-I      intronic chr18:21193834(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ANKRD29	chr18:21184085(-) A-I intron -    22327324 chr18:21194147(-) A-I intron -    22028664 chr18:21194150(-) A-I intron -    22028664 chr18:21194158(-) A-I intron -    22028664 chr18:21194163(-) A-I intron -    22028664 chr18:21194219(-) A-I intron -    22028664 chr18:21194220(-) A-I intron -    22028664 chr18:21194263(-) A-I intron -    22028664 chr18:21194277(-) A-I intron -    22028664 chr18:21194298(-) A-I intron -    22028664 chr18:21194305(-) A-I intron -    22028664 chr18:21194307(-) A-I intron -    22028664 chr18:21181736(-) A-G intron -    22484847 chr18:21183352(-) A-G intron -    22484847 chr18:21183380(-) A-G intron -    22484847 chr18:21184085(-) A-G intron -    22484847 chr18:21184623(-) A-G intron -    22484847 chr18:21184633(-) A-G intron -    22484847 chr18:21185016(-) A-G intron -    22484847 chr18:21185022(-) A-G intron -    22484847 chr18:21190747(-) A-G intron -    22484847 chr18:21190931(-) A-G intron -    22484847 chr18:21190932(-) A-G intron -    22484847 chr18:21195023(-) A-G intron -    22484847 chr18:21195029(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ANKRD29	chr18:21180563-21180564(-) m6A 3'UTR//exon       24981863//27773535 chr18:21180575-21180576(-) m6A 3'UTR//exon       24981863//27773535 chr18:21180583-21180584(-) m6A 3'UTR//exon       24981863//27773535 chr18:21180622-21180623(-) m6A 3'UTR//exon       24981863//27773535 chr18:21180639-21180640(-) m6A 3'UTR//exon       24981863//27773535 chr18:21180676-21180677(-) m6A 3'UTR//exon       24981863//27773535 chr18:21180696-21180697(-) m6A 3'UTR//exon       24981863//27773535 chr18:21180814-21180815(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr18:21180839-21180840(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21180866-21180867(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21180878-21180879(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21180891-21180892(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21180917-21180918(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21180981-21180982(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21181004-21181005(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21181015-21181016(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21181020-21181021(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr18:21181252-21181253(-) m6A 3'UTR//CDS//exon       24981863 chr18:21181264-21181265(-) m6A 3'UTR//CDS//exon       24981863 chr18:21227189-21227190(-) m6A exon//intron       27773535 chr18:21228444-21228445(-) m6A 3'UTR//intron       24284625 chr18:21228453-21228454(-) m6A 3'UTR//intron       24284625 chr18:21228469-21228470(-) m6A 3'UTR//intron       24284625//22608085 chr18:21228561-21228562(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr18:21228596-21228597(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr18:21228647-21228648(-) m6A 3'UTR//intron       24284625//27773535 chr18:21228834-21228835(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr18:21228851-21228852(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr18:21228882-21228883(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr18:21228890-21228891(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr18:21228911-21228912(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr18:21229050-21229051(-) m6A CDS       24284625//25456834//24981863//22608085 chr18:21229059-21229060(-) m6A CDS       24284625//25456834//24981863//22608085 chr18:21229080-21229081(-) m6A CDS       24284625//25456834//24981863//22608085 chr18:21229107-21229108(-) m6A CDS       24284625//25456834//24981863//22608085 chr18:21229150-21229151(-) m6A CDS       24284625//25456834 chr18:21242695-21242696(-) m6A 5'UTR       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ANKRD29	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: ANKRD29

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.