Basic Information:

  VIRBase ID:  

VHID00516064

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          CLDN23:  NM_194284     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	CLDN23
miRBase Accession/Entrez ID	MIMAT0001581	137075
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	CLDNL//hCG1646163

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLDN23	chr8:8559698-8559699(+) m6A 5'UTR       25456834 chr8:8559732-8559733(+) m6A 5'UTR       25456834 chr8:8560020-8560021(+) m6A CDS       25456834//24981863 chr8:8560059-8560060(+) m6A CDS       25456834//24981863 chr8:8560107-8560108(+) m6A CDS       25456834//24981863 chr8:8560492-8560493(+) m6A CDS       24981863 chr8:8560824-8560825(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr8:8560862-8560863(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr8:8560868-8560869(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr8:8560913-8560914(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr8:8560918-8560919(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr8:8560923-8560924(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr8:8561078-8561079(+) m6A 3'UTR       24284625//25456834//24981863 chr8:8561085-8561086(+) m6A 3'UTR       24284625//25456834//24981863 chr8:8561113-8561114(+) m6A 3'UTR       24284625//25456834//24981863 chr8:8561223-8561224(+) m6A 3'UTR       24284625//24981863 chr8:8561278-8561279(+) m6A 3'UTR       24284625//24981863 chr8:8561449-8561450(+) m6A 3'UTR       24981863 chr8:8561508-8561509(+) m6A 3'UTR       24981863 chr8:8561539-8561540(+) m6A 3'UTR       24981863 chr8:8561600-8561601(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CLDN23	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: CLDN23

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.