Basic Information:

  VIRBase ID:  

VHID00515430

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          RAB39B:  NM_171998     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	RAB39B
miRBase Accession/Entrez ID	MIMAT0001581	116442
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	BGMR//MRX72//WSMN//WSN

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAB39B	chrX:154488042-154488043(-) Y 3'UTR       26075521 chrX:154489756-154489757(-) m6A 3'UTR       - chrX:154489761-154489762(-) m6A 3'UTR       - chrX:154489773-154489774(-) m6A 3'UTR       25456834 chrX:154489819-154489820(-) m6A 3'UTR       25456834//22608085 chrX:154489900-154489901(-) m6A 3'UTR       25456834//24981863//27773535//27371828//22608085 chrX:154489946-154489947(-) m6A 3'UTR       25456834//24981863//27773535//27371828//22608085 chrX:154489956-154489957(-) m6A 3'UTR       25456834//24981863//27773535//27371828//22608085 chrX:154490001-154490002(-) m6A 3'UTR       25456834//24981863//27773535//27371828//22608085 chrX:154490048-154490049(-) m6A 3'UTR       25456834//27773535//22608085 chrX:154490066-154490067(-) m6A 3'UTR       25456834//27773535//22608085 chrX:154490220-154490221(-) m6A CDS       24981863//27773535//22608085 chrX:154490232-154490233(-) m6A CDS       24981863//27773535//22608085 chrX:154490309-154490310(-) m6A CDS       24981863//27773535//22608085 chrX:154490410-154490411(-) m6A CDS       24981863//27773535//22608085 chrX:154490487-154490488(-) m6A CDS       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAB39B	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: RAB39B

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.