Detail Information

Basic Information:


  VIRBase ID:  

VHID00514924

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:           STARD13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-1-5p STARD13
miRBase
Accession/Entrez ID		 MIMAT0001581 90627
Organism Human herpesvirus 5 strain AD169 Homo sapiens
Category miRNA mRNA
Alias - ARHGAP37//DLC2//GT650//LINC00464

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STARD13
chr13:33695642(-) A-I      intronic
chr13:33695648(-) A-I      intronic
chr13:33761948(-) A-I      intronic
chr13:33761998(-) A-I      intronic
chr13:33824135(-) A-I      intronic
chr13:33824141(-) A-I      intronic
chr13:33824146(-) A-I      intronic
chr13:33761999(-) A-I      intronic
chr13:33695597(-) A-I      intronic
chr13:33762000(-) A-I      intronic
chr13:33824131(-) A-I      intronic
chr13:33695071(-) A-I      intronic
chr13:33695060(-) A-I      intronic
chr13:33695041(-) A-I      intronic
chr13:33695045(-) A-I      intronic
chr13:33695157(-) A-I      intronic
chr13:33695643(-) A-I      intronic
chr13:33696075(-) A-I      intronic
chr13:33697070(-) A-I      intronic
chr13:33715115(-) A-I      intronic
chr13:33796346(-) A-I      intronic
chr13:33694939(-) A-I      intronic
chr13:33824096(-) A-I      intronic
chr13:33696165(-) A-I      intronic
chr13:33824059(-) A-I      intronic
chr13:33800844(-) A-I      intronic
chr13:33716319(-) A-I      intronic
chr13:33800839(-) A-I      intronic
chr13:33800674(-) A-I      intronic
chr13:33695928(-) A-I      intronic
chr13:33800643(-) A-I      intronic
chr13:33797750(-) A-I      intronic
chr13:33695105(-) A-I      intronic
chr13:33764884(-) A-I      intronic
chr13:33797749(-) A-I      intronic
chr13:33766988(-) A-I      intronic
chr13:33696400(-) A-I      intronic
chr13:33766848(-) A-I      intronic
chr13:33735655(-) A-I      intronic
chr13:33696178(-) A-I      intronic
chr13:33695482(-) A-I      intronic
chr13:33695538(-) A-I      intronic
chr13:33823957(-) A-I      intronic
chr13:33695981(-) A-I      intronic
chr13:33695909(-) A-I      intronic
chr13:33731669(-) A-I      intronic
chr13:33695878(-) A-I      intronic
chr13:33695653(-) A-I      intronic
chr13:33695581(-) A-I      intronic
chr13:33731730(-) A-I      intronic
chr13:33696398(-) A-I      intronic
chr13:33761957(-) A-I      intronic
chr13:33764848(-) A-I      intronic
chr13:33710175(-) A-I      intronic
chr13:33731747(-) A-I      intronic
chr13:33695025(-) A-I      intronic
chr13:33824075(-) A-I      intronic
chr13:33764918(-) A-I      intronic
chr13:33764919(-) A-I      intronic
chr13:33764950(-) A-I      intronic
chr13:33764791(-) A-I      intronic
chr13:33766923(-) A-I      intronic
chr13:33824127(-) A-I      intronic
chr13:33700245(-) A-I      Syn:Arg->Arg
chr13:33796609(-) A-I      intronic
chr13:33795331(-) A-I      intronic
chr13:33695674(-) A-I      intronic
chr13:33710176(-) A-I      intronic
chr13:33696176(-) A-I      intronic
chr13:33731725(-) A-I      intronic
chr13:33695883(-) A-I      intronic
chr13:33764872(-) A-I      intronic
chr13:33824091(-) A-I      intronic
chr13:33715060(-) A-I      intronic
chr13:33695512(-) A-I      intronic
chr13:33695303(-) A-I      intronic
chr13:33695622(-) A-I      intronic
chr13:33764506(-) A-I      intronic
chr13:33695888(-) A-I      intronic
chr13:33694944(-) A-I      intronic
chr13:33694009(-) A-I      intronic
chr13:33824121(-) A-I      intronic
chr13:33695629(-) A-I      intronic
chr13:33764474(-) A-I      intronic
chr13:33762097(-) A-I      intronic
chr13:33824065(-) A-I      intronic
chr13:33695573(-) A-I      intronic
chr13:33844359(-) A-I      intronic
chr13:33822371(-) A-I      intronic
chr13:33764552(-) A-I      intronic
chr13:33796449(-) A-I      intronic
chr13:33696394(-) A-I      intronic
chr13:33695536(-) A-I      intronic
chr13:33695001(-) A-I      intronic
chr13:33696177(-) A-I      intronic
chr13:33764888(-) A-I      intronic
chr13:33795385(-) A-I      intronic
chr13:33796463(-) A-I      intronic
chr13:33795452(-) A-I      intronic
chr13:33796510(-) A-I      intronic
chr13:33796388(-) A-I      intronic
chr13:33695459(-) A-I      intronic
chr13:33844297(-) A-I      intronic
chr13:33696153(-) A-I      intronic
chr13:33696068(-) A-I      intronic
chr13:33764862(-) A-I      intronic
chr13:33764901(-) A-I      intronic
chr13:33766793(-) A-I      intronic
chr13:33764522(-) A-I      intronic
chr13:33695815(-) A-I      intronic
chr13:33694938(-) A-I      intronic
chr13:33764821(-) A-I      intronic
chr13:33796564(-) A-I      intronic
chr13:33796409(-) A-I      intronic
chr13:33764792(-) A-I      intronic
chr13:33764861(-) A-I      intronic
chr13:33795525(-) A-I      intronic
chr13:33696209(-) A-I      intronic
chr13:33796565(-) A-I      intronic
chr13:33762111(-) A-I      intronic
chr13:33696152(-) A-I      intronic
chr13:33795457(-) A-I      intronic
chr13:33695593(-) A-I      intronic
chr13:33695620(-) A-I      intronic
chr13:33716329(-) A-I      intronic
chr13:33696151(-) A-I      intronic
chr13:33695610(-) A-I      intronic
chr13:33806233(-) A-I      intronic
chr13:33806224(-) A-I      intronic
chr13:33764820(-) A-I      intronic
chr13:33844342(-) A-I      intronic
chr13:33796332(-) A-I      intronic
chr13:33695460(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED STARD13
chr13:33870284(-) A-I intron -    22327324
chr13:33915608(-) A-I intron -    22327324
chr13:33915611(-) A-I intron -    22327324
chr13:33921583(-) A-I intron -    22327324
chr13:33974330(-) A-I intron -    22327324
chr13:34085278(-) A-I intron -    22327324
chr13:34148757(-) A-I intron -    22327324
chr13:34148771(-) A-I intron -    22327324
chr13:34148848(-) A-I intron -    22327324
chr13:34148857(-) A-I intron -    22327324
chr13:34149145(-) A-I intron -    22327324
chr13:34178767(-) A-I intron -    22327324
chr13:34178850(-) A-I intron -    22327324
chr13:34181566(-) A-I intron -    22327324
chr13:34181572(-) A-I intron -    22327324
chr13:34182317(-) A-I intron -    22327324
chr13:34194008(-) A-I intron -    22327324
chr13:34194034(-) A-I intron -    22327324
chr13:34194037(-) A-I intron -    22327324
chr13:34194111(-) A-I intron -    22327324
chr13:34194150(-) A-I intron -    22327324
chr13:34194158(-) A-I intron -    22327324
chr13:34194517(-) A-I intron -    22327324
chr13:34195647(-) A-I intron -    22327324
chr13:34196221(-) A-I intron -    22327324
chr13:34199541(-) A-I intron -    22327324
chr13:34199669(-) A-I intron -    22327324
chr13:34200018(-) A-I intron -    22327324
chr13:34200021(-) A-I intron -    22327324
chr13:34222330(-) A-I intron -    22327324
chr13:34223578(-) A-I intron -    22327324
chr13:34223633(-) A-I intron -    22327324
chr13:34223636(-) A-I intron -    22327324
chr13:34223637(-) A-I intron -    22327324
chr13:34232328(-) A-I intron -    22327324
chr13:34241002(-) A-I intron -    22327324
chr13:34243784(-) A-I intron -    22327324
chr13:34245032(-) A-I intron -    22327324
chr13:34245791(-) A-I intron -    22327324
chr13:33795331(-) A-G intron -    22484847
chr13:33795385(-) A-G intron -    22484847
chr13:33795452(-) A-G intron -    22484847
chr13:33795457(-) A-G intron -    22484847
chr13:33795525(-) A-G intron -    22484847
chr13:33796510(-) A-G intron -    22484847
chr13:33796564(-) A-G intron -    22484847
chr13:33796565(-) A-G intron -    22484847
chr13:33796609(-) A-G intron -    22484847
chr13:34159881(-) A-G intron -    22484847
chr13:34223585(-) A-G intron -    22484847
chr13:34223591(-) A-G intron -    22484847
chr13:34223632(-) A-G intron -    22484847
chr13:34223633(-) A-G intron -    22484847
chr13:34223636(-) A-G intron -    22484847
chr13:34223637(-) A-G intron -    22484847
chr13:34244436(-) A-G intron -    22484847
chr13:34244448(-) A-G intron -    22484847
chr13:34244467(-) A-G intron -    22484847
chr13:34244485(-) A-G intron -    22484847
chr13:34244974(-) A-G intron -    22484847
chr13:34245017(-) A-G intron -    22484847
chr13:34245032(-) A-G intron -    22484847
chr13:33765012(-) A-G intron -    22484847
chr13:33905486(-) A-C intron -    22484847
chr13:34030464(-) A-G intron -    22484847
chr13:34033144(-) A-G intron -    22484847
chr13:34148757(-) A-G intron -    22484847
chr13:34148770(-) A-G intron -    22484847
chr13:34148771(-) A-G intron -    22484847
chr13:34161100(-) A-G intron -    22484847
chr13:34181566(-) A-G intron -    22484847
chr13:34181572(-) A-G intron -    22484847
chr13:34182081(-) A-G intron -    22484847
chr13:34196047(-) A-G intron -    22484847
chr13:34196079(-) A-G intron -    22484847
chr13:34243846(-) A-G intron -    22484847
chr13:34243852(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STARD13
chr13:33677513-33677514(-) m6A 3'UTR       27773535
chr13:33677757-33677758(-) m6A 3'UTR       27773535
chr13:33677764-33677765(-) m6A 3'UTR       27773535
chr13:33679470-33679471(-) m6A 3'UTR       24981863//27773535//22608085
chr13:33679500-33679501(-) m6A 3'UTR       24981863//27773535//22608085
chr13:33679558-33679559(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr13:33679634-33679635(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr13:33679706-33679707(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr13:33679740-33679741(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr13:33679775-33679776(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr13:33679810-33679811(-) m6A CDS       24284625//24209618//24981863//22608085
chr13:33680900-33680901(-) m6A CDS       24209618//24981863//22608085
chr13:33680923-33680924(-) m6A CDS       22608085
chr13:33680947-33680948(-) m6A CDS       22608085
chr13:33703253-33703254(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703276-33703277(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703283-33703284(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703386-33703387(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr13:33703531-33703532(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr13:33703600-33703601(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703607-33703608(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:33703674-33703675(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr13:33703696-33703697(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr13:33703716-33703717(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27773536//22575960//22608085
chr13:33703972-33703973(-) m6A CDS       24284625//25456834//24981863
chr13:33704020-33704021(-) m6A CDS       24284625//25456834//24981863
chr13:33704160-33704161(-) m6A CDS       24209618//27773536
chr13:33704247-33704248(-) m6A CDS       -
chr13:33704277-33704278(-) m6A CDS       25456834//27773535
chr13:33704313-33704314(-) m6A CDS       25456834//24981863//27773535
chr13:33704368-33704369(-) m6A CDS       24981863//27773535
chr13:33704380-33704381(-) m6A CDS       24981863//27773535
chr13:33923163-33923164(-) m6A 3'UTR//intron       -
chr13:33923202-33923203(-) m6A 3'UTR//intron       -
chr13:33923227-33923228(-) m6A 3'UTR//intron       -
chr13:33923264-33923265(-) m6A 3'UTR//intron       -
chr13:33924660-33924661(-) m6A 5'UTR       27773536
chr13:33924694-33924695(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate STARD13
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-1-5p
Interactor2: STARD13

Evidence Support:


Strong-Evidence RISC-IP
Support Database ViRBase

References:


PMID 20585629 Target region 5'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line HEK293 cells Interactor2 expression None
Description Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.

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