Basic Information:

  VIRBase ID:  

VHID00514146

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          BCL2L12:  NR_104202     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	BCL2L12
miRBase Accession/Entrez ID	MIMAT0001581	83596
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BCL2L12	chr19:50171257(+) A-I      intronic chr19:50171377(+) A-I      intronic chr19:50176345(+) A-I      intronic chr19:50174312(+) A-I      intronic chr19:50171896(+) A-I      intronic chr19:50174635(+) A-I      intronic chr19:50174840(+) A-I      intronic chr19:50176186(+) A-I      intronic chr19:50174155(+) A-I      intronic chr19:50174073(+) A-I      intronic chr19:50174046(+) A-I      intronic chr19:50174020(+) A-I      intronic chr19:50174019(+) A-I      intronic chr19:50171590(+) A-I      intronic chr19:50171138(+) A-I      intronic chr19:50171300(+) A-I      intronic chr19:50171190(+) A-I      intronic chr19:50171887(+) A-I      intronic chr19:50174623(+) A-I      intronic chr19:50174340(+) A-I      intronic chr19:50171209(+) A-I      intronic chr19:50171895(+) A-I      intronic chr19:50171890(+) A-I      intronic chr19:50171539(+) A-I      intronic chr19:50171479(+) A-I      intronic chr19:50174552(+) A-I      intronic chr19:50171893(+) A-I      intronic chr19:50176358(+) A-I      intronic chr19:50171904(+) A-I      intronic chr19:50171185(+) A-I      intronic chr19:50176263(+) A-I      intronic chr19:50171177(+) A-I      intronic chr19:50172537(+) A-I      intronic chr19:50171851(+) A-I      intronic chr19:50174351(+) A-I      intronic chr19:50171299(+) A-I      intronic chr19:50176303(+) A-I      intronic chr19:50171806(+) A-I      intronic chr19:50174006(+) A-I      intronic chr19:50171861(+) A-I      intronic chr19:50176241(+) A-I      intronic chr19:50172642(+) A-I      intronic chr19:50176332(+) A-I      intronic chr19:50174374(+) A-I      intronic chr19:50176253(+) A-I      intronic chr19:50171220(+) A-I      intronic chr19:50171894(+) A-I      intronic chr19:50176385(+) A-I      intronic chr19:50171871(+) A-I      intronic chr19:50171805(+) A-I      intronic chr19:50174624(+) A-I      intronic chr19:50176161(+) A-I      intronic chr19:50174272(+) A-I      intronic chr19:50171482(+) A-I      intronic chr19:50174610(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	BCL2L12	chr19:50171894(+) A-G intron -    22484847 chr19:50171895(+) A-G intron -    22484847 chr19:50171900(+) A-G intron -    22484847 chr19:50174351(+) A-G intron -    22484847 chr19:50174374(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BCL2L12	chr19:50168503-50168504(+) m6A 5'UTR       - chr19:50168541-50168542(+) m6A 5'UTR       - chr19:50168557-50168558(+) m6A 5'UTR       - chr19:50168602-50168603(+) m6A 5'UTR       - chr19:50168626-50168627(+) m6A 5'UTR       - chr19:50168631-50168632(+) m6A 5'UTR       - chr19:50168670-50168671(+) m6A 5'UTR       - chr19:50168820-50168821(+) m6A 5'UTR       - chr19:50168922-50168923(+) m6A 5'UTR       24284625//25456834//24981863//27773535//27371828 chr19:50168958-50168959(+) m6A 5'UTR       24284625//25456834//24981863//27773535//27371828 chr19:50169040-50169041(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828 chr19:50169068-50169069(+) m6A 5'UTR       24284625//25456834//24981863//26404942//27773535//27371828 chr19:50169247-50169248(+) m6A 5'UTR//CDS       24284625//24981863//22608085 chr19:50169280-50169281(+) m6A 5'UTR//CDS//exon       24284625//24981863//22608085 chr19:50169319-50169320(+) m6A 5'UTR//CDS//exon       24284625//24981863//22608085 chr19:50169983-50169984(+) m6A CDS//exon       24284625//24981863 chr19:50173482-50173483(+) m6A 3'UTR//CDS//intron       24284625 chr19:50173687-50173688(+) m6A 3'UTR//CDS//intron       24284625 chr19:50176982-50176983(+) m6A 3'UTR//CDS//exon       24284625 chr19:50176988-50176989(+) m6A 3'UTR//CDS//exon       24284625 chr19:50177000-50177001(+) m6A 3'UTR//CDS//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	BCL2L12	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: BCL2L12

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.