Basic Information:

  VIRBase ID:  

VHID00508213

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          SIGMAR1:  NR_104108     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	SIGMAR1
miRBase Accession/Entrez ID	MIMAT0001581	10280
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	ALS16//DSMA2//hSigmaR1//OPRS1//SIG-1R//sigma1R//SR-BP//SR-BP1//SRBP

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SIGMAR1	chr9:34634890-34634891(-) m6A 3'UTR       27773535 chr9:34634915-34634916(-) m6A 3'UTR       27773535 chr9:34634966-34634967(-) m6A 3'UTR       27773535 chr9:34635269-34635270(-) m6A 3'UTR       24284625//26404942//27773535 chr9:34635344-34635345(-) m6A 3'UTR       24284625//26404942//27773535 chr9:34635409-34635410(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:34635427-34635428(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:34635445-34635446(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:34635454-34635455(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:34635464-34635465(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:34635472-34635473(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:34635537-34635538(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635543-34635544(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635595-34635596(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635607-34635608(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635635-34635636(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635716-34635717(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:34635800-34635801(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960 chr9:34636773-34636774(-) m6A exon//intron       24284625//27773535 chr9:34636793-34636794(-) m6A exon//intron       24284625//27773535 chr9:34636798-34636799(-) m6A exon//intron       24284625//27773535 chr9:34636825-34636826(-) m6A exon//intron       24284625//27773535 chr9:34637193-34637194(-) m6A exon//intron       24284625//22575960 chr9:34637410-34637411(-) m6A 5'UTR//CDS//exon       24284625//27773536//22575960 chr9:34637459-34637460(-) m6A 5'UTR//exon//intron       24284625//27773536 chr9:34637466-34637467(-) m6A 5'UTR//exon//intron       24284625//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SIGMAR1	Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: SIGMAR1

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.