Basic Information:

  VIRBase ID:  

VHID00508108

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          PLXNC1:  NR_037687     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	PLXNC1
miRBase Accession/Entrez ID	MIMAT0001581	10154
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD232//PLXN-C1//VESPR

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PLXNC1	chr12:94587769(+) A-I      intronic chr12:94587762(+) A-I      intronic chr12:94584158(+) A-I      intronic chr12:94549929(+) A-I      intronic chr12:94549935(+) A-I      intronic chr12:94568078(+) A-I      intronic chr12:94584092(+) A-I      intronic chr12:94582192(+) A-I      intronic chr12:94582160(+) A-I      intronic chr12:94647562(+) A-I      intronic chr12:94647576(+) A-I      intronic chr12:94576151(+) A-I      intronic chr12:94576149(+) A-I      intronic chr12:94576114(+) A-I      intronic chr12:94576100(+) A-I      intronic chr12:94576456(+) A-I      intronic chr12:94607736(+) A-I      intronic chr12:94583325(+) A-I      intronic chr12:94608097(+) A-I      intronic chr12:94646734(+) A-I      intronic chr12:94609993(+) A-I      intronic chr12:94575018(+) A-I      intronic chr12:94608098(+) A-I      intronic chr12:94585331(+) A-I      intronic chr12:94672618(+) A-I      intronic chr12:94647702(+) A-I      intronic chr12:94585304(+) A-I      intronic chr12:94568035(+) A-I      intronic chr12:94550711(+) A-I      intronic chr12:94607782(+) A-I      intronic chr12:94585310(+) A-I      intronic chr12:94583433(+) A-I      intronic chr12:94645509(+) A-I      intronic chr12:94647472(+) A-I      intronic chr12:94645637(+) A-I      intronic chr12:94607776(+) A-I      intronic chr12:94647639(+) A-I      intronic chr12:94687556(+) A-I      intronic chr12:94672627(+) A-I      intronic chr12:94584037(+) A-I      intronic chr12:94646928(+) A-I      intronic chr12:94646880(+) A-I      intronic chr12:94607960(+) A-I      intronic chr12:94607743(+) A-I      intronic chr12:94568073(+) A-I      intronic chr12:94607742(+) A-I      intronic chr12:94585417(+) A-I      intronic chr12:94607973(+) A-I      intronic chr12:94646856(+) A-I      intronic chr12:94606589(+) A-I      intronic chr12:94606625(+) A-I      intronic chr12:94606707(+) A-I      intronic chr12:94576280(+) A-I      intronic chr12:94585374(+) A-I      intronic chr12:94653607(+) A-I      intronic chr12:94583191(+) A-I      intronic chr12:94647616(+) A-I      intronic chr12:94583223(+) A-I      intronic chr12:94609843(+) A-I      intronic chr12:94636108(+) A-I      intronic chr12:94575015(+) A-I      intronic chr12:94576079(+) A-I      intronic chr12:94593696(+) A-I      intronic chr12:94643386(+) A-I      intronic chr12:94576057(+) A-I      intronic chr12:94582280(+) A-I      intronic chr12:94583357(+) A-I      intronic chr12:94583440(+) A-I      intronic chr12:94644521(+) A-I      intronic chr12:94583388(+) A-I      intronic chr12:94583296(+) A-I      intronic chr12:94588455(+) A-I      intronic chr12:94574992(+) A-I      intronic chr12:94583197(+) A-I      intronic chr12:94575085(+) A-I      intronic chr12:94575043(+) A-I      intronic chr12:94576109(+) A-I      intronic chr12:94584193(+) A-I      intronic chr12:94584279(+) A-I      intronic chr12:94550675(+) A-I      intronic chr12:94575041(+) A-I      intronic chr12:94575076(+) A-I      intronic chr12:94646937(+) A-I      intronic chr12:94585469(+) A-I      intronic chr12:94575084(+) A-I      intronic chr12:94647675(+) A-I      intronic chr12:94654086(+) A-I      intronic chr12:94585305(+) A-I      intronic chr12:94585440(+) A-I      intronic chr12:94647683(+) A-I      intronic chr12:94647575(+) A-I      intronic chr12:94584041(+) A-I      intronic chr12:94576119(+) A-I      intronic chr12:94647729(+) A-I      intronic chr12:94584145(+) A-I      intronic chr12:94609963(+) A-I      intronic chr12:94584200(+) A-I      intronic chr12:94582229(+) A-I      intronic chr12:94645703(+) A-I      intronic chr12:94643193(+) A-I      intronic chr12:94575016(+) A-I      intronic chr12:94576344(+) A-I      intronic chr12:94645603(+) A-I      intronic chr12:94583297(+) A-I      intronic chr12:94610032(+) A-I      intronic chr12:94585481(+) A-I      intronic chr12:94585439(+) A-I      intronic chr12:94575003(+) A-I      intronic chr12:94574988(+) A-I      intronic chr12:94643356(+) A-I      intronic chr12:94590239(+) A-I      intronic chr12:94588014(+) A-I      intronic chr12:94607930(+) A-I      intronic chr12:94549958(+) A-I      intronic chr12:94587734(+) A-I      intronic chr12:94584148(+) A-I      intronic chr12:94584291(+) A-I      intronic chr12:94585351(+) A-I      intronic chr12:94607962(+) A-I      intronic chr12:94643366(+) A-I      intronic chr12:94583246(+) A-I      intronic chr12:94582118(+) A-I      intronic chr12:94584285(+) A-I      intronic chr12:94584252(+) A-I      intronic chr12:94609994(+) A-I      intronic chr12:94590297(+) A-I      intronic chr12:94568038(+) A-I      intronic chr12:94647615(+) A-I      intronic chr12:94609792(+) A-I      intronic chr12:94654036(+) A-I      intronic chr12:94576264(+) A-I      intronic chr12:94576372(+) A-I      intronic chr12:94587726(+) A-I      intronic chr12:94575053(+) A-I      intronic chr12:94645674(+) A-I      intronic chr12:94574998(+) A-I      intronic chr12:94575070(+) A-I      intronic chr12:94587875(+) A-I      intronic chr12:94647599(+) A-I      intronic chr12:94548152(+) A-I      intronic chr12:94583376(+) A-I      intronic chr12:94584144(+) A-I      intronic chr12:94590025(+) A-I      intronic chr12:94583309(+) A-I      intronic chr12:94590149(+) A-I      intronic chr12:94646733(+) A-I      intronic chr12:94584039(+) A-I      intronic chr12:94585340(+) A-I      intronic chr12:94675462(+) A-I      intronic chr12:94575014(+) A-I      intronic chr12:94593671(+) A-I      intronic chr12:94583419(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PLXNC1	chr12:94574988(+) A-I intron -    15342557 chr12:94574992(+) A-I intron -    15342557 chr12:94574998(+) A-I intron -    15342557 chr12:94575003(+) A-I intron -    15342557 chr12:94575014(+) A-I intron -    15342557 chr12:94575041(+) A-I intron -    15342557 chr12:94575043(+) A-I intron -    15342557 chr12:94575053(+) A-I intron -    15342557 chr12:94575070(+) A-I intron -    15342557 chr12:94575076(+) A-I intron -    15342557 chr12:94575085(+) A-I intron -    15342557 chr12:94576057(+) A-I intron -    15342557 chr12:94576079(+) A-I intron -    15342557 chr12:94576109(+) A-I intron -    15342557 chr12:94576119(+) A-I intron -    15342557 chr12:94587726(+) A-G intron -    22484847 chr12:94587734(+) A-G intron -    22484847 chr12:94583388(+) A-G intron -    22484847 chr12:94583419(+) A-G intron -    22484847 chr12:94585374(+) A-G intron -    22484847 chr12:94675476(+) T-C intron -    22484847 chr12:94675486(+) T-C intron -    22484847 chr12:94675488(+) T-C intron -    22484847 chr12:94568038(+) A-G intron -    22484847 chr12:94582280(+) A-G intron -    22484847 chr12:94584144(+) A-G intron -    22484847 chr12:94584145(+) A-G intron -    22484847 chr12:94584148(+) A-G intron -    22484847 chr12:94584279(+) A-G intron -    22484847 chr12:94585351(+) A-G intron -    22484847 chr12:94585439(+) A-G intron -    22484847 chr12:94585440(+) A-G intron -    22484847 chr12:94607962(+) A-G intron -    22484847 chr12:94609963(+) A-G intron -    22484847 chr12:94644521(+) A-G intron -    22484847 chr12:94647616(+) A-G intron -    22484847 chr12:94674850(+) T-C intron -    22484847 chr12:94674852(+) T-C intron -    22484847 chr12:94677668(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PLXNC1	chr12:94542943-94542944(+) m6A CDS       25456834//22608085 chr12:94542952-94542953(+) m6A CDS       25456834//22608085 chr12:94542991-94542992(+) m6A CDS       25456834//22608085 chr12:94543128-94543129(+) m6A CDS       - chr12:94543261-94543262(+) m6A CDS       - chr12:94543372-94543373(+) m6A CDS       25456834//24981863 chr12:94543783-94543784(+) m6A CDS       - chr12:94544612-94544613(+) m6A exon//intron       - chr12:94544638-94544639(+) m6A exon//intron       - chr12:94563022-94563023(+) m6A CDS//exon       - chr12:94563027-94563028(+) m6A CDS//exon       - chr12:94700314-94700315(+) m6A 3'UTR       27773535 chr12:94700328-94700329(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PLXNC1	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: PLXNC1

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.