Basic Information:

  VIRBase ID:  

VHID00507642

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          NR1D1:  NM_021724     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	NR1D1
miRBase Accession/Entrez ID	MIMAT0001581	9572
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	ear-1//EAR1//hRev//REVERBA//REVERBalpha//THRA1//THRAL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NR1D1	chr17:38249539(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NR1D1	chr17:38249125-38249126(-) m6A 3'UTR       24284625//24209618//24981863//27773535 chr17:38249148-38249149(-) m6A 3'UTR       24284625//24209618//24981863//27773535 chr17:38249245-38249246(-) m6A 3'UTR       24284625//24981863//27773535 chr17:38249289-38249290(-) m6A 3'UTR       24284625//27773535 chr17:38249399-38249400(-) m6A CDS       24284625 chr17:38249436-38249437(-) m6A CDS       24284625 chr17:38249450-38249451(-) m6A CDS       24284625 chr17:38252229-38252230(-) m6A CDS       27773535 chr17:38252270-38252271(-) m6A CDS       27773535 chr17:38253499-38253500(-) m6A CDS       27773535 chr17:38256333-38256334(-) m6A CDS       27773535 chr17:38256348-38256349(-) m6A 5'UTR       27773535 chr17:38256495-38256496(-) m6A 5'UTR       27773535 chr17:38256551-38256552(-) m6A 5'UTR       24284625//27773535//22575960 chr17:38256608-38256609(-) m6A 5'UTR       24284625//24981863//27773535 chr17:38256639-38256640(-) m6A 5'UTR       24284625//24981863//27773535 chr17:38256720-38256721(-) m6A 5'UTR       24284625//24209618//24981863//27773535//22575960 chr17:38256916-38256917(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NR1D1	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: NR1D1

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.