Detail Information

Basic Information:


  VIRBase ID:  

VHID00506529

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:           TRIM25:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-1-5p TRIM25
miRBase
Accession/Entrez ID		 MIMAT0001581 7706
Organism Human herpesvirus 5 strain AD169 Homo sapiens
Category miRNA mRNA
Alias - EFP//RNF147//Z147//ZNF147

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRIM25
chr17:54983917(-) A-I      intronic
chr17:54983310(-) A-I      intronic
chr17:54984137(-) A-I      intronic
chr17:54982581(-) A-I      intronic
chr17:54984144(-) A-I      intronic
chr17:54983127(-) A-I      intronic
chr17:54990368(-) A-I      intronic
chr17:54983238(-) A-I      intronic
chr17:54983262(-) A-I      intronic
chr17:54983101(-) A-I      intronic
chr17:54982662(-) A-I      intronic
chr17:54983993(-) A-I      intronic
chr17:54983951(-) A-I      intronic
chr17:54982577(-) A-I      intronic
chr17:54984059(-) A-I      intronic
chr17:54982601(-) A-I      intronic
chr17:54983995(-) A-I      intronic
chr17:54982585(-) A-I      intronic
chr17:54965860(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRIM25
chr17:54973875(-) C-T intron -    22484847
chr17:54982577(-) A-G intron -    22484847
chr17:54965860(-) A-G exon 3'UTR    22484847
chr17:54990654(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRIM25
chr17:54965284-54965285(-) m6A 3'UTR       28052920//27773535//22608085
chr17:54965340-54965341(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22608085
chr17:54965350-54965351(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//22608085
chr17:54965456-54965457(-) m6A 3'UTR       24284625//24981863//28052920//22608085
chr17:54965463-54965464(-) m6A 3'UTR       24284625//24981863//28052920//22608085
chr17:54965475-54965476(-) m6A 3'UTR       24284625//24981863//28052920//22608085
chr17:54965528-54965529(-) m6A 3'UTR       24284625//24981863//22608085
chr17:54965590-54965591(-) m6A 3'UTR       24284625//24981863//22608085
chr17:54966028-54966029(-) m6A 3'UTR       -
chr17:54966062-54966063(-) m6A 3'UTR       -
chr17:54967981-54967982(-) m6A 3'UTR//exon       24284625
chr17:54968194-54968195(-) m6A 3'UTR//exon       24284625//24981863//22575960
chr17:54968394-54968395(-) m6A 3'UTR//exon       24284625
chr17:54968401-54968402(-) m6A 3'UTR//exon       24284625
chr17:54968499-54968500(-) m6A 3'UTR//exon       24284625//24981863
chr17:54968524-54968525(-) m6A 3'UTR//exon       24284625//24981863
chr17:54968581-54968582(-) m6A 3'UTR//exon       24284625
chr17:54968989-54968990(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr17:54969015-54969016(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr17:54969136-54969137(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//22575960
chr17:54969251-54969252(-) m6A 3'UTR//CDS       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:54969352-54969353(-) m6A 3'UTR//CDS       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:54969391-54969392(-) m6A 3'UTR//CDS       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:54969493-54969494(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:54969568-54969569(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:54972719-54972720(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535
chr17:54972739-54972740(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535
chr17:54972771-54972772(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535
chr17:54972897-54972898(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535
chr17:54972915-54972916(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535
chr17:54973248-54973249(-) m6A exon//intron       24981863
chr17:54973290-54973291(-) m6A 3'UTR//CDS//exon       24981863
chr17:54976371-54976372(-) m6A exon//intron       24981863
chr17:54978838-54978839(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828
chr17:54978877-54978878(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr17:54978882-54978883(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr17:54978927-54978928(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr17:54981654-54981655(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr17:54981674-54981675(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr17:54981773-54981774(-) m6A 3'UTR//CDS//exon       24981863//28052920//27773535//27371828
chr17:54981838-54981839(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr17:54985847-54985848(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr17:54985906-54985907(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr17:54989481-54989482(-) m6A CDS//intron       27371828
chr17:54989506-54989507(-) m6A CDS//intron       27371828
chr17:54989511-54989512(-) m6A CDS//intron       27371828
chr17:54990924-54990925(-) m6A CDS       24284625
chr17:54991152-54991153(-) m6A CDS       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRIM25
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-1-5p
Interactor2: TRIM25

Evidence Support:


Strong-Evidence RISC-IP
Support Database ViRBase

References:


PMID 20585629 Target region 5'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line HEK293 cells Interactor2 expression None
Description Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.

Starting a new search, please wait ...