Detail Information

Basic Information:


  VIRBase ID:  

VHID00506219

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:           TP53:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US25-1-5p TP53
miRBase
Accession/Entrez ID		 MIMAT0001581 7157
Organism Human herpesvirus 5 strain AD169 Homo sapiens
Category miRNA mRNA
Alias - BCC7//BMFS5//LFS1//P53//TRP53

RNA Editing:


Resource Symbol Editing Position
Lncediting TP53
    chr17: 7588904
    chr17: 7588877
Resource Symbol Editing Position Change Genetic Region
RADAR TP53
chr17:7574250(-) A-I      intronic
chr17:7573520(-) A-I      intronic
chr17:7573351(-) A-I      intronic
chr17:7573387(-) A-I      intronic
chr17:7573391(-) A-I      intronic
chr17:7573398(-) A-I      intronic
chr17:7573399(-) A-I      intronic
chr17:7573478(-) A-I      intronic
chr17:7574292(-) A-I      intronic
chr17:7574227(-) A-I      intronic
chr17:7573369(-) A-I      intronic
chr17:7575291(-) A-I      intronic
chr17:7575306(-) A-I      intronic
chr17:7575453(-) A-I      intronic
chr17:7576230(-) A-I      intronic
chr17:7576261(-) A-I      intronic
chr17:7576264(-) A-I      intronic
chr17:7576361(-) A-I      intronic
chr17:7587661(-) A-I      intronic
chr17:7576380(-) A-I      intronic
chr17:7576396(-) A-I      intronic
chr17:7576405(-) A-I      intronic
chr17:7576421(-) A-I      intronic
chr17:7586541(-) A-I      intronic
chr17:7575466(-) A-I      intronic
chr17:7575516(-) A-I      intronic
chr17:7575536(-) A-I      intronic
chr17:7575592(-) A-I      intronic
chr17:7575608(-) A-I      intronic
chr17:7576437(-) A-I      intronic
chr17:7583952(-) A-I      intronic
chr17:7574403(-) A-I      intronic
chr17:7574462(-) A-I      intronic
chr17:7574463(-) A-I      intronic
chr17:7574479(-) A-I      intronic
chr17:7574730(-) A-I      intronic
chr17:7574756(-) A-I      intronic
chr17:7574767(-) A-I      intronic
chr17:7574782(-) A-I      intronic
chr17:7574800(-) A-I      intronic
chr17:7574811(-) A-I      intronic
chr17:7574821(-) A-I      intronic
chr17:7574826(-) A-I      intronic
chr17:7588904(-) A-I      intronic
chr17:7588877(-) A-I      intronic
chr17:7587669(-) A-I      intronic
chr17:7587624(-) A-I      intronic
chr17:7587598(-) A-I      intronic
chr17:7587574(-) A-I      intronic
chr17:7587205(-) A-I      intronic
chr17:7583956(-) A-I      intronic
chr17:7587199(-) A-I      intronic
chr17:7575775(-) A-I      intronic
chr17:7575868(-) A-I      intronic
chr17:7575939(-) A-I      intronic
chr17:7576110(-) A-I      intronic
chr17:7576184(-) A-I      intronic
chr17:7573279(-) A-I      intronic
chr17:7573315(-) A-I      intronic
chr17:7573355(-) A-I      intronic
chr17:7586686(-) A-I      intronic
chr17:7573435(-) A-I      intronic
chr17:7574228(-) A-I      intronic
chr17:7574305(-) A-I      intronic
chr17:7572048(-) A-I      3'UTR
chr17:7572107(-) A-I      3'UTR
chr17:7571943(-) A-I      3'UTR
chr17:7571926(-) A-I      3'UTR
chr17:7571944(-) A-I      3'UTR
chr17:7574393(-) A-I      intronic
chr17:7586338(-) A-I      intronic
chr17:7587302(-) A-I      intronic
chr17:7574688(-) A-I      intronic
chr17:7574296(-) A-I      intronic
chr17:7587561(-) A-I      intronic
chr17:7587082(-) A-I      intronic
chr17:7574520(-) A-I      intronic
chr17:7584245(-) A-I      intronic
chr17:7587693(-) A-I      intronic
chr17:7574572(-) A-I      intronic
chr17:7587621(-) A-I      intronic
chr17:7575299(-) A-I      intronic
chr17:7576319(-) A-I      intronic
chr17:7574311(-) A-I      intronic
chr17:7584291(-) A-I      intronic
chr17:7573395(-) A-I      intronic
chr17:7574545(-) A-I      intronic
chr17:7575897(-) A-I      intronic
chr17:7587676(-) A-I      intronic
chr17:7587514(-) A-I      intronic
chr17:7587473(-) A-I      intronic
chr17:7587534(-) A-I      intronic
chr17:7587218(-) A-I      intronic
chr17:7574298(-) A-I      intronic
chr17:7585684(-) A-I      intronic
chr17:7587701(-) A-I      intronic
chr17:7573459(-) A-I      intronic
chr17:7573390(-) A-I      intronic
chr17:7587545(-) A-I      intronic
chr17:7582810(-) A-I      intronic
chr17:7574715(-) A-I      intronic
chr17:7575858(-) A-I      intronic
chr17:7573473(-) A-I      intronic
chr17:7574318(-) A-I      intronic
chr17:7587126(-) A-I      intronic
chr17:7572004(-) A-I      3'UTR
chr17:7574265(-) A-I      intronic
chr17:7587660(-) A-I      intronic
chr17:7571913(-) A-I      3'UTR
chr17:7572141(-) A-I      3'UTR
chr17:7587472(-) A-I      intronic
chr17:7575233(-) A-I      intronic
chr17:7573467(-) A-I      intronic
chr17:7572026(-) A-I      3'UTR
chr17:7587671(-) A-I      intronic
chr17:7587663(-) A-I      intronic
chr17:7573334(-) A-I      intronic
chr17:7587200(-) A-I      intronic
chr17:7574341(-) A-I      intronic
chr17:7575528(-) A-I      intronic
chr17:7574913(-) A-I      intronic
chr17:7575356(-) A-I      intronic
chr17:7574407(-) A-I      intronic
chr17:7587537(-) A-I      intronic
chr17:7575244(-) A-I      intronic
chr17:7576064(-) A-I      intronic
chr17:7587301(-) A-I      intronic
chr17:7587668(-) A-I      intronic
chr17:7586352(-) A-I      intronic
chr17:7574783(-) A-I      intronic
chr17:7574517(-) A-I      intronic
chr17:7573472(-) A-I      intronic
chr17:7575465(-) A-I      intronic
chr17:7573360(-) A-I      intronic
chr17:7587190(-) A-I      intronic
chr17:7575947(-) A-I      intronic
chr17:7587198(-) A-I      intronic
chr17:7576006(-) A-I      intronic
chr17:7587499(-) A-I      intronic
chr17:7574757(-) A-I      intronic
chr17:7582804(-) A-I      intronic
chr17:7582053(-) A-I      intronic
chr17:7574539(-) A-I      intronic
chr17:7574258(-) A-I      intronic
chr17:7573454(-) A-I      intronic
chr17:7574354(-) A-I      intronic
chr17:7574328(-) A-I      intronic
chr17:7573361(-) A-I      intronic
chr17:7576027(-) A-I      intronic
chr17:7587525(-) A-I      intronic
chr17:7587645(-) A-I      intronic
chr17:7575777(-) A-I      intronic
chr17:7574547(-) A-I      intronic
chr17:7571931(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TP53
chr17:7587671(-) A-I intron -    22327324
chr17:7572004(-) A-G exon 3'UTR    22484847
chr17:7572148(-) C-T exon 3'UTR    22484847
chr17:7572154(-) C-T exon 3'UTR    22484847
chr17:7572173(-) C-T exon 3'UTR    22484847
chr17:7573360(-) A-G intron -    22484847
chr17:7573361(-) A-G intron -    22484847
chr17:7574354(-) A-G intron -    22484847
chr17:7574547(-) A-G intron -    22484847
chr17:7587198(-) A-G intron -    22484847
chr17:7587301(-) A-G intron -    22484847
chr17:7587302(-) A-G intron -    22484847
chr17:7587472(-) A-G intron -    22484847
chr17:7587645(-) A-G intron -    22484847
chr17:7587663(-) A-G intron -    22484847
chr17:7587668(-) A-G intron -    22484847
chr17:7587671(-) A-G intron -    22484847
chr17:7587676(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TP53
chr17:7569558-7569559(-) m6A CDS//intron       24981863//27773535
chr17:7571749-7571750(-) m6A 3'UTR//intron       24981863//27773535
chr17:7571942-7571943(-) m6A 3'UTR//intron       27773535
chr17:7572719-7572720(-) m6A 3'UTR//intron       26404942
chr17:7572771-7572772(-) m6A 3'UTR//intron       -
chr17:7572804-7572805(-) m6A 3'UTR//intron       -
chr17:7572843-7572844(-) m6A 3'UTR//intron       -
chr17:7572930-7572931(-) m6A 3'UTR//CDS//intron       27773535//27371828
chr17:7572949-7572950(-) m6A 3'UTR//CDS//intron       27773535//27371828
chr17:7572962-7572963(-) m6A 3'UTR//CDS//intron       27773535//27371828
chr17:7573979-7573980(-) m6A 3'UTR//CDS//intron       27371828
chr17:7576546-7576547(-) m6A 3'UTR//CDS//intron       27371828
chr17:7576650-7576651(-) m6A CDS//intron       24981863//27371828
chr17:7576882-7576883(-) m6A CDS//intron       24981863//27371828//27773536
chr17:7577095-7577096(-) m6A CDS//intron       -
chr17:7578511-7578512(-) m6A 5'UTR//CDS//exon       24284625//27773535
chr17:7579334-7579335(-) m6A CDS//exon//intron       24284625
chr17:7579382-7579383(-) m6A CDS//exon//intron       24284625
chr17:7579516-7579517(-) m6A CDS//exon//intron       24284625//22575960
chr17:7579533-7579534(-) m6A CDS//exon//intron       24284625//22575960
chr17:7579709-7579710(-) m6A 5'UTR//CDS//exon//intron       24284625//22575960
chr17:7579720-7579721(-) m6A 5'UTR//CDS//exon//intron       24284625//22575960
chr17:7579840-7579841(-) m6A 5'UTR//CDS//exon//intron       24284625//27371828//27773536
chr17:7579850-7579851(-) m6A 5'UTR//CDS//exon//intron       24284625//27371828//27773536
chr17:7579860-7579861(-) m6A 5'UTR//CDS//exon//intron       24284625//27371828//27773536
chr17:7579932-7579933(-) m6A 5'UTR//exon//intron       24284625//27371828//27773536
chr17:7580702-7580703(-) m6A 5'UTR//intron       24284625//24981863//27371828//27773536
chr17:7588791-7588792(-) m6A intron       27371828//27773536
chr17:7588861-7588862(-) m6A intron       27371828//27773536
chr17:7588979-7588980(-) m6A intron       24284625//25456834//24981863//27371828//22608085
chr17:7589074-7589075(-) m6A intron       24284625//25456834//24981863//22608085
chr17:7589175-7589176(-) m6A intron       24284625//24981863//27773535//22608085
chr17:7589398-7589399(-) m6A intron       24284625//22608085
chr17:7589550-7589551(-) m6A intron       22608085
chr17:7590754-7590755(-) m6A 5'UTR//exon       24284625//25456834//24981863
chr17:7590831-7590832(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TP53
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US25-1-5p
Interactor2: TP53

Evidence Support:


Strong-Evidence RISC-IP
Support Database ViRBase

References:


PMID 20585629 Target region 5'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line HEK293 cells Interactor2 expression None
Description Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.

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