Basic Information:

  VIRBase ID:  

VHID00505956

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          STC1:  NM_003155     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	STC1
miRBase Accession/Entrez ID	MIMAT0001581	6781
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	STC

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	STC1	chr8:23701976-23701977(-) m6A 3'UTR       24981863 chr8:23701983-23701984(-) m6A 3'UTR       24981863 chr8:23701994-23701995(-) m6A 3'UTR       24981863 chr8:23702325-23702326(-) m6A CDS       24284625//25456834//24981863 chr8:23702343-23702344(-) m6A CDS       24284625//25456834//24981863 chr8:23702413-23702414(-) m6A CDS       24284625//25456834//24981863//26404942//27773536 chr8:23702431-23702432(-) m6A CDS       24284625//25456834//24981863//26404942//27773536 chr8:23702487-23702488(-) m6A CDS       24284625//25456834//24981863//26404942 chr8:23702508-23702509(-) m6A CDS       24284625//25456834//24981863//26404942 chr8:23702540-23702541(-) m6A CDS       25456834//24981863 chr8:23708883-23708884(-) m6A CDS       - chr8:23712066-23712067(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	STC1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: STC1

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.