Basic Information:

  VIRBase ID:  

VHID00505728

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          SLC2A3:  NM_006931     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	SLC2A3
miRBase Accession/Entrez ID	MIMAT0001581	6515
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	GLUT3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC2A3	chr12:8078865(-) A-I      intronic chr12:8078856(-) A-I      intronic chr12:8087965(-) A-I      intronic chr12:8076537(-) A-I      intronic chr12:8076557(-) A-I      intronic chr12:8078785(-) A-I      intronic chr12:8076539(-) A-I      intronic chr12:8078835(-) A-I      intronic chr12:8078793(-) A-I      intronic chr12:8078908(-) A-I      intronic chr12:8078857(-) A-I      intronic chr12:8078890(-) A-I      intronic chr12:8083587(-) A-I      intronic chr12:8087936(-) A-I      intronic chr12:8087948(-) A-I      intronic chr12:8076173(-) A-I      intronic chr12:8076437(-) A-I      intronic chr12:8076457(-) A-I      intronic chr12:8076461(-) A-I      intronic chr12:8076462(-) A-I      intronic chr12:8076470(-) A-I      intronic chr12:8076473(-) A-I      intronic chr12:8076129(-) A-I      intronic chr12:8076497(-) A-I      intronic chr12:8080454(-) A-I      intronic chr12:8076503(-) A-I      intronic chr12:8076128(-) A-I      intronic chr12:8076511(-) A-I      intronic chr12:8076525(-) A-I      intronic chr12:8076529(-) A-I      intronic chr12:8076532(-) A-I      intronic chr12:8076533(-) A-I      intronic chr12:8076577(-) A-I      intronic chr12:8076583(-) A-I      intronic chr12:8078764(-) A-I      intronic chr12:8078767(-) A-I      intronic chr12:8078784(-) A-I      intronic chr12:8078799(-) A-I      intronic chr12:8078803(-) A-I      intronic chr12:8078812(-) A-I      intronic chr12:8078816(-) A-I      intronic chr12:8078831(-) A-I      intronic chr12:8078851(-) A-I      intronic chr12:8078854(-) A-I      intronic chr12:8078855(-) A-I      intronic chr12:8078875(-) A-I      intronic chr12:8078887(-) A-I      intronic chr12:8078914(-) A-I      intronic chr12:8078919(-) A-I      intronic chr12:8078929(-) A-I      intronic chr12:8078982(-) A-I      intronic chr12:8079234(-) A-I      intronic chr12:8079237(-) A-I      intronic chr12:8080546(-) A-I      intronic chr12:8080618(-) A-I      intronic chr12:8080619(-) A-I      intronic chr12:8080620(-) A-I      intronic chr12:8080639(-) A-I      intronic chr12:8080642(-) A-I      intronic chr12:8080655(-) A-I      intronic chr12:8080828(-) A-I      intronic chr12:8080958(-) A-I      intronic chr12:8080968(-) A-I      intronic chr12:8081482(-) A-I      intronic chr12:8081549(-) A-I      intronic chr12:8082064(-) A-I      intronic chr12:8084269(-) A-I      intronic chr12:8084312(-) A-I      intronic chr12:8084333(-) A-I      intronic chr12:8084492(-) A-I      intronic chr12:8084507(-) A-I      intronic chr12:8084614(-) A-I      intronic chr12:8084615(-) A-I      intronic chr12:8087644(-) A-I      intronic chr12:8087677(-) A-I      intronic chr12:8087681(-) A-I      intronic chr12:8087704(-) A-I      intronic chr12:8087706(-) A-I      intronic chr12:8076154(-) A-I      intronic chr12:8076167(-) A-I      intronic chr12:8076047(-) A-I      intronic chr12:8076148(-) A-I      intronic chr12:8076178(-) A-I      intronic chr12:8081486(-) A-I      intronic chr12:8076018(-) A-I      intronic chr12:8076006(-) A-I      intronic chr12:8075993(-) A-I      intronic chr12:8075903(-) A-I      intronic chr12:8075897(-) A-I      intronic chr12:8075873(-) A-I      intronic chr12:8075833(-) A-I      intronic chr12:8075802(-) A-I      intronic chr12:8075800(-) A-I      intronic chr12:8075794(-) A-I      intronic chr12:8075312(-) A-I      intronic chr12:8074592(-) A-I      intronic chr12:8074567(-) A-I      intronic chr12:8076493(-) A-I      intronic chr12:8076188(-) A-I      intronic chr12:8076208(-) A-I      intronic chr12:8076196(-) A-I      intronic chr12:8076089(-) A-I      intronic chr12:8075795(-) A-I      intronic chr12:8076438(-) A-I      intronic chr12:8076159(-) A-I      intronic chr12:8076571(-) A-I      intronic chr12:8076042(-) A-I      intronic chr12:8076502(-) A-I      intronic chr12:8076022(-) A-I      intronic chr12:8075863(-) A-I      intronic chr12:8076099(-) A-I      intronic chr12:8076582(-) A-I      intronic chr12:8075911(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC2A3	chr12:8072002-8072003(-) Y 3'UTR//exon       25219674 chr12:8073383-8073384(-) m6A 3'UTR//exon       24981863 chr12:8073645-8073646(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085 chr12:8073780-8073781(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085 chr12:8073789-8073790(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085 chr12:8073812-8073813(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085 chr12:8073929-8073930(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085 chr12:8073944-8073945(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27371828//22575960//22608085 chr12:8074025-8074026(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085 chr12:8074048-8074049(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085 chr12:8074130-8074131(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085 chr12:8074142-8074143(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085 chr12:8075457-8075458(-) m6A CDS//exon       24284625 chr12:8075515-8075516(-) m6A CDS//exon       24284625 chr12:8088623-8088624(-) m6A CDS//exon       24284625//26404942//27371828 chr12:8088649-8088650(-) m6A 5'UTR//exon       24284625//24981863//26404942//27371828 chr12:8088714-8088715(-) m6A 5'UTR//exon       24284625//24981863//26404942//27371828 chr12:8088731-8088732(-) m6A 5'UTR//exon       24284625//24981863//26404942//27371828 chr12:8088762-8088763(-) m6A 5'UTR//exon       24284625//24981863//26404942//27371828 chr12:8088786-8088787(-) m6A 5'UTR       24284625//25456834//24981863//26404942//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC2A3	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: SLC2A3

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.