Basic Information:

  VIRBase ID:  

VHID00505178

  Virus:  

Human herpesvirus 5 strain AD169

  Host:  

Homo sapiens

  Confidence Score:  

0.7311

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US25-1-5p:  MIMAT0001581          PSMC5:  NM_002805     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US25-1-5p	PSMC5
miRBase Accession/Entrez ID	MIMAT0001581	5705
Organism	Human herpesvirus 5 strain AD169	Homo sapiens
Category	miRNA	mRNA
Alias	-	p45//p45/SUG//RPT6//S8//SUG-1//SUG1//TBP10//TRIP1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PSMC5	chr17:61904864-61904865(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863 chr17:61904987-61904988(+) m6A exon//intron       24284625//24981863//27371828//27773536 chr17:61905478-61905479(+) m6A 5'UTR//exon//intron       24981863 chr17:61905529-61905530(+) m6A CDS//exon//intron       24981863//22575960 chr17:61905562-61905563(+) m6A CDS//exon//intron       24981863//22575960 chr17:61905579-61905580(+) m6A exon//intron       24981863//22575960 chr17:61905624-61905625(+) m6A exon//intron       - chr17:61906878-61906879(+) m6A CDS//exon//intron       24981863//22575960 chr17:61906909-61906910(+) m6A CDS//exon//intron       24981863//22575960 chr17:61907164-61907165(+) m6A exon//intron       - chr17:61907332-61907333(+) m6A exon//intron       24981863//27773535 chr17:61907383-61907384(+) m6A exon//intron       24981863 chr17:61907703-61907704(+) m6A 3'UTR//CDS//exon       26404942 chr17:61907767-61907768(+) m6A 3'UTR//CDS//exon       26404942 chr17:61907772-61907773(+) m6A 3'UTR//CDS//exon       26404942 chr17:61907777-61907778(+) Cm 3'UTR//CDS//exon       - chr17:61908185-61908186(+) m6A 3'UTR//CDS//exon//intron       22575960 chr17:61908204-61908205(+) m6A 3'UTR//CDS//exon//intron       22575960 chr17:61908238-61908239(+) m6A 3'UTR//CDS//exon//intron       22575960 chr17:61908269-61908270(+) m6A 3'UTR//CDS//exon//intron       22575960 chr17:61908512-61908513(+) m6A 3'UTR//CDS//exon       22575960 chr17:61908578-61908579(+) m6A 3'UTR//CDS//exon       22575960 chr17:61908720-61908721(+) m6A 3'UTR//CDS//exon       27773535//22575960 chr17:61908796-61908797(+) m6A exon//intron       22575960 chr17:61908875-61908876(+) m6A 3'UTR//CDS//exon       22575960 chr17:61908905-61908906(+) m6A 3'UTR//CDS//exon       22575960 chr17:61908998-61908999(+) m6A exon//intron       24981863//22575960 chr17:61909147-61909148(+) m6A 3'UTR//CDS//exon       24981863//27773535//22575960 chr17:61909288-61909289(+) m6A 3'UTR//CDS//exon       27773535//22575960 chr17:61909300-61909301(+) m6A 3'UTR//CDS//exon       27773535//22575960 chr17:61909333-61909334(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PSMC5	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US25-1-5p
Interactor2: PSMC5

Evidence Support:

Strong-Evidence	RISC-IP
Support Database	ViRBase

References:

PMID	20585629	Target region	5'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HEK293 cells	Interactor2 expression	None
Description	Here, we identify cellular transcript targets of one of the most highly expressed HCMV encoded miRNAs, miR-US25-1, using a recently developed biochemical approach called RISC immunoprecipitation. Strikingly, the majority of identified transcripts contained miR-US25-1 target sites within the 5'UTR rather than the 3'UTR.