Basic Information:

  VIRBase ID:  

VHID00499316

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-3p:  MIMAT0015238          ZBTB20:  NR_121662     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-3p	ZBTB20
miRBase Accession/Entrez ID	MIMAT0015238	26137
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DPZF//HOF//ODA-8S//PRIMS//ZNF288

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZBTB20	chr3:114083198(-) A-I      intronic chr3:114348935(-) A-I      intronic chr3:114270978(-) A-I      intronic chr3:114270945(-) A-I      intronic chr3:114734769(-) A-I      intronic chr3:114256771(-) A-I      intronic chr3:114256859(-) A-I      intronic chr3:114732675(-) A-I      intronic chr3:114270950(-) A-I      intronic chr3:114065641(-) A-I      intronic chr3:114065661(-) A-I      intronic chr3:114065701(-) A-I      intronic chr3:114083136(-) A-I      intronic chr3:114083150(-) A-I      intronic chr3:114083179(-) A-I      intronic chr3:114065590(-) A-I      intronic chr3:114656436(-) A-I      intronic chr3:114656389(-) A-I      intronic chr3:114270934(-) A-I      intronic chr3:114511894(-) A-I      intronic chr3:114511892(-) A-I      intronic chr3:114511887(-) A-I      intronic chr3:114348985(-) A-I      intronic chr3:114348980(-) A-I      intronic chr3:114348937(-) A-I      intronic chr3:114270979(-) A-I      intronic chr3:114348925(-) A-I      intronic chr3:114065593(-) A-I      intronic chr3:114065563(-) A-I      intronic chr3:114065616(-) A-I      intronic chr3:114270966(-) A-I      intronic chr3:114270977(-) A-I      intronic chr3:114065630(-) A-I      intronic chr3:114065609(-) A-I      intronic chr3:114312317(-) A-I      intronic chr3:114312299(-) A-I      intronic chr3:114783568(-) A-I      intronic chr3:114783563(-) A-I      intronic chr3:114783427(-) A-I      intronic chr3:114656951(-) A-I      intronic chr3:114656837(-) A-I      intronic chr3:114656437(-) A-I      intronic chr3:114656401(-) A-I      intronic chr3:114656371(-) A-I      intronic chr3:114656298(-) A-I      intronic chr3:114638521(-) A-I      intronic chr3:114638495(-) A-I      intronic chr3:114268909(-) A-I      intronic chr3:114511934(-) A-I      intronic chr3:114306017(-) A-I      intronic chr3:114305982(-) A-I      intronic chr3:114305968(-) A-I      intronic chr3:114295327(-) A-I      intronic chr3:114295296(-) A-I      intronic chr3:114295157(-) A-I      intronic chr3:114269735(-) A-I      intronic chr3:114269726(-) A-I      intronic chr3:114269695(-) A-I      intronic chr3:114269694(-) A-I      intronic chr3:114269683(-) A-I      intronic chr3:114269633(-) A-I      intronic chr3:114267569(-) A-I      intronic chr3:114267503(-) A-I      intronic chr3:114267457(-) A-I      intronic chr3:114263631(-) A-I      intronic chr3:114263625(-) A-I      intronic chr3:114263624(-) A-I      intronic chr3:114263603(-) A-I      intronic chr3:114445501(-) A-I      intronic chr3:114445515(-) A-I      intronic chr3:114466402(-) A-I      intronic chr3:114496202(-) A-I      intronic chr3:114499528(-) A-I      intronic chr3:114499559(-) A-I      intronic chr3:114511871(-) A-I      intronic chr3:114511879(-) A-I      intronic chr3:114496269(-) A-I      intronic chr3:114325862(-) A-I      intronic chr3:114325776(-) A-I      intronic chr3:114325751(-) A-I      intronic chr3:114325726(-) A-I      intronic chr3:114312510(-) A-I      intronic chr3:114312487(-) A-I      intronic chr3:114312482(-) A-I      intronic chr3:114312404(-) A-I      intronic chr3:114824858(-) A-I      intronic chr3:114824825(-) A-I      intronic chr3:114824821(-) A-I      intronic chr3:114824793(-) A-I      intronic chr3:114824776(-) A-I      intronic chr3:114824741(-) A-I      intronic chr3:114824725(-) A-I      intronic chr3:114263547(-) A-I      intronic chr3:114263436(-) A-I      intronic chr3:114263418(-) A-I      intronic chr3:114263398(-) A-I      intronic chr3:114220723(-) A-I      intronic chr3:114220391(-) A-I      intronic chr3:114220365(-) A-I      intronic chr3:114197059(-) A-I      intronic chr3:114196978(-) A-I      intronic chr3:114196974(-) A-I      intronic chr3:114091998(-) A-I      intronic chr3:114091990(-) A-I      intronic chr3:114091596(-) A-I      intronic chr3:114091431(-) A-I      intronic chr3:114083241(-) A-I      intronic chr3:114083215(-) A-I      intronic chr3:114083214(-) A-I      intronic chr3:114083211(-) A-I      intronic chr3:114083119(-) A-I      intronic chr3:114083116(-) A-I      intronic chr3:114083107(-) A-I      intronic chr3:114068000(-) A-I      intronic chr3:114065789(-) A-I      intronic chr3:114065665(-) A-I      intronic chr3:114065618(-) A-I      intronic chr3:114821786(-) A-I      intronic chr3:114821781(-) A-I      intronic chr3:114312378(-) A-I      intronic chr3:114065625(-) A-I      intronic chr3:114271052(-) A-I      intronic chr3:114268896(-) A-I      intronic chr3:114263443(-) A-I      intronic chr3:114499450(-) A-I      intronic chr3:114263584(-) A-I      intronic chr3:114068006(-) A-I      intronic chr3:114295345(-) A-I      intronic chr3:114065736(-) A-I      intronic chr3:114847328(-) A-I      intronic chr3:114065713(-) A-I      intronic chr3:114511909(-) A-I      intronic chr3:114108555(-) A-I      intronic chr3:114851529(-) A-I      intronic chr3:114065673(-) A-I      intronic chr3:114267477(-) A-I      intronic chr3:114846245(-) A-I      intronic chr3:114091821(-) A-I      intronic chr3:114826089(-) A-I      intronic chr3:114065671(-) A-I      intronic chr3:114301502(-) A-I      intronic chr3:114263553(-) A-I      intronic chr3:114468144(-) A-I      intronic chr3:114783366(-) A-I      intronic chr3:114270889(-) A-I      intronic chr3:114333721(-) A-I      intronic chr3:114325708(-) A-I      intronic chr3:114263555(-) A-I      intronic chr3:114270886(-) A-I      intronic chr3:114511958(-) A-I      intronic chr3:114066030(-) A-I      intronic chr3:114400190(-) A-I      intronic chr3:114442854(-) A-I      intronic chr3:114448748(-) A-I      intronic chr3:114826215(-) A-I      intronic chr3:114348745(-) A-I      intronic chr3:114783436(-) A-I      intronic chr3:114067867(-) A-I      intronic chr3:114755488(-) A-I      intronic chr3:114065806(-) A-I      intronic chr3:114270877(-) A-I      intronic chr3:114067854(-) A-I      intronic chr3:114448858(-) A-I      intronic chr3:114638443(-) A-I      intronic chr3:114445647(-) A-I      intronic chr3:114824762(-) A-I      intronic chr3:114065635(-) A-I      intronic chr3:114798373(-) A-I      intronic chr3:114825352(-) A-I      intronic chr3:114065640(-) A-I      intronic chr3:114269709(-) A-I      intronic chr3:114263515(-) A-I      intronic chr3:114824803(-) A-I      intronic chr3:114496189(-) A-I      intronic chr3:114267625(-) A-I      intronic chr3:114656834(-) A-I      intronic chr3:114092033(-) A-I      intronic chr3:114825219(-) A-I      intronic chr3:114062645(-) A-I      intronic chr3:114496268(-) A-I      intronic chr3:114301500(-) A-I      intronic chr3:114496164(-) A-I      intronic chr3:114325755(-) A-I      intronic chr3:114325777(-) A-I      intronic chr3:114065729(-) A-I      intronic chr3:114067961(-) A-I      intronic chr3:114783367(-) A-I      intronic chr3:114065611(-) A-I      intronic chr3:114511999(-) A-I      intronic chr3:114825177(-) A-I      intronic chr3:114267462(-) A-I      intronic chr3:114512022(-) A-I      intronic chr3:114656963(-) A-I      intronic chr3:114496239(-) A-I      intronic chr3:114325883(-) A-I      intronic chr3:114824802(-) A-I      intronic chr3:114325845(-) A-I      intronic chr3:114499508(-) A-I      intronic chr3:114656463(-) A-I      intronic chr3:114065765(-) A-I      intronic chr3:114656433(-) A-I      intronic chr3:114837196(-) A-I      intronic chr3:114067802(-) A-I      intronic chr3:114400105(-) A-I      intronic chr3:114326287(-) A-I      intronic chr3:114499463(-) A-I      intronic chr3:114326332(-) A-I      intronic chr3:114091604(-) A-I      intronic chr3:114065728(-) A-I      intronic chr3:114325683(-) A-I      intronic chr3:114267463(-) A-I      intronic chr3:114472316(-) A-I      intronic chr3:114065647(-) A-I      intronic chr3:114826151(-) A-I      intronic chr3:114312330(-) A-I      intronic chr3:114826253(-) A-I      intronic chr3:114826127(-) A-I      intronic chr3:114825148(-) A-I      intronic chr3:114656407(-) A-I      intronic chr3:114312396(-) A-I      intronic chr3:114496186(-) A-I      intronic chr3:114067790(-) A-I      intronic chr3:114571375(-) A-I      intronic chr3:114755285(-) A-I      intronic chr3:114499562(-) A-I      intronic chr3:114325725(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZBTB20	chr3:114258979(-) A-G intron -    22484847 chr3:114065611(-) A-G intron -    22484847 chr3:114065625(-) A-G intron -    22484847 chr3:114065671(-) A-G intron -    22484847 chr3:114065673(-) A-G intron -    22484847 chr3:114065713(-) A-G intron -    22484847 chr3:114067854(-) A-G intron -    22484847 chr3:114067985(-) A-G intron -    22484847 chr3:114068006(-) A-G intron -    22484847 chr3:114269780(-) G-A intron -    22484847 chr3:114271052(-) A-G intron -    22484847 chr3:114325708(-) A-G intron -    22484847 chr3:114325725(-) A-G intron -    22484847 chr3:114325845(-) A-G intron -    22484847 chr3:114325882(-) A-G intron -    22484847 chr3:114325883(-) A-G intron -    22484847 chr3:114406995(-) A-G intron -    22484847 chr3:114480598(-) G-A intron -    22484847 chr3:114496164(-) A-G intron -    22484847 chr3:114496169(-) A-G intron -    22484847 chr3:114496186(-) A-G intron -    22484847 chr3:114496189(-) A-G intron -    22484847 chr3:114496239(-) A-G intron -    22484847 chr3:114496268(-) A-G intron -    22484847 chr3:114499463(-) A-G intron -    22484847 chr3:114499508(-) A-G intron -    22484847 chr3:114499562(-) A-G intron -    22484847 chr3:114656433(-) A-G intron -    22484847 chr3:114656463(-) A-G intron -    22484847 chr3:114656755(-) A-G intron -    22484847 chr3:114656963(-) A-G intron -    22484847 chr3:114824762(-) A-G intron -    22484847 chr3:114824802(-) A-G intron -    22484847 chr3:114824803(-) A-G intron -    22484847 chr3:114824935(-) A-G intron -    22484847 chr3:114825213(-) A-G intron -    22484847 chr3:114825219(-) A-G intron -    22484847 chr3:114826089(-) A-G intron -    22484847 chr3:114826151(-) A-G intron -    22484847 chr3:114826215(-) A-G intron -    22484847 chr3:114826253(-) A-G intron -    22484847 chr3:114851529(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZBTB20	chr3:114057021-114057022(-) m6A 3'UTR       24981863//27773535 chr3:114057051-114057052(-) m6A 3'UTR       24981863//27773535//22608085 chr3:114057128-114057129(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr3:114057134-114057135(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr3:114057333-114057334(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr3:114057360-114057361(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr3:114057381-114057382(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr3:114057407-114057408(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr3:114057695-114057696(-) m6A 3'UTR       24981863//27773535 chr3:114057793-114057794(-) m6A 3'UTR       24981863//27773535 chr3:114057801-114057802(-) m6A 3'UTR       24981863//27773535 chr3:114057814-114057815(-) m6A 3'UTR       24981863//27773535 chr3:114057819-114057820(-) m6A 3'UTR       24981863//27773535 chr3:114057824-114057825(-) m6A 3'UTR       24981863//27773535 chr3:114057940-114057941(-) m6A CDS       24284625//24981863//27773535//22575960 chr3:114058009-114058010(-) m6A CDS       24284625//24981863//22575960 chr3:114058054-114058055(-) m6A CDS       24284625//24981863 chr3:114069149-114069150(-) m6A CDS//intron       24284625//24981863 chr3:114069154-114069155(-) m6A CDS//intron       24284625//24981863 chr3:114069168-114069169(-) m6A CDS//intron       24284625//24981863 chr3:114069315-114069316(-) m6A CDS//intron       24284625//24981863//27773535 chr3:114069480-114069481(-) m6A CDS//intron       24284625//27773535//22575960 chr3:114069486-114069487(-) m6A CDS//intron       24284625//27773535//22575960 chr3:114069599-114069600(-) m6A CDS//intron       24284625//27773535//22575960 chr3:114069642-114069643(-) m6A CDS//intron       27773535//27371828 chr3:114069657-114069658(-) m6A CDS//intron       27773535//27371828 chr3:114069709-114069710(-) m6A CDS//intron       24981863//27371828 chr3:114069722-114069723(-) m6A CDS//intron       24981863//27371828 chr3:114069842-114069843(-) m6A CDS//intron       24284625//24981863//27773535//27371828 chr3:114069848-114069849(-) m6A CDS//intron       24284625//24981863//27773535//27371828 chr3:114069960-114069961(-) m6A CDS//intron       24284625//24981863//27773535//27371828 chr3:114070002-114070003(-) m6A CDS//intron       24284625//24981863//27773535//27371828 chr3:114070073-114070074(-) m6A CDS//intron       24284625 chr3:114070110-114070111(-) m6A CDS//intron       24284625 chr3:114070202-114070203(-) m6A CDS//intron       24284625//24981863//27371828//27773536//22575960 chr3:114070295-114070296(-) m6A CDS//intron       24284625//24981863//27371828//27773536//22575960//22608085 chr3:114070307-114070308(-) m6A CDS//intron       24284625//24981863//27371828//27773536//22575960//22608085 chr3:114070374-114070375(-) m6A CDS//intron       24981863//27371828//27773536//22575960 chr3:114070647-114070648(-) m6A CDS//intron       27773535//22575960 chr3:114099092-114099093(-) m6A 5'UTR//CDS//exon       27773535 chr3:114099128-114099129(-) m6A 5'UTR//CDS//exon       27773535 chr3:114099152-114099153(-) m6A 5'UTR//CDS//exon       27773535 chr3:114099227-114099228(-) m6A 5'UTR//CDS//exon       27773535 chr3:114099237-114099238(-) m6A 5'UTR//CDS//exon       27773535 chr3:114107919-114107920(-) m6A 5'UTR//exon       27773535 chr3:114137927-114137928(-) m6A exon//intron       27773535 chr3:114137984-114137985(-) m6A exon//intron       27773535 chr3:114377413-114377414(-) m6A exon//intron       27773535 chr3:114377492-114377493(-) m6A exon//intron       27773535 chr3:114377587-114377588(-) m6A exon//intron       27773535 chr3:114377597-114377598(-) m6A exon//intron       27773535 chr3:114819061-114819062(-) m6A exon//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-3p	Exosome Primary dendritic cells     21505438
	ZBTB20	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-TO cells     22532836 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-3p
Interactor2: ZBTB20

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg