Detail Information

Basic Information:


  VIRBase ID:  

VHID00499133

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-3p:           TBC1D9B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-12-3p TBC1D9B
miRBase
Accession/Entrez ID		 MIMAT0015238 23061
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - GRAMD9B

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TBC1D9B
chr5:179316805(-) A-I      intronic
chr5:179316736(-) A-I      intronic
chr5:179316734(-) A-I      intronic
chr5:179309109(-) A-I      intronic
chr5:179309996(-) A-I      intronic
chr5:179310037(-) A-I      intronic
chr5:179310086(-) A-I      intronic
chr5:179310108(-) A-I      intronic
chr5:179310148(-) A-I      intronic
chr5:179316065(-) A-I      intronic
chr5:179316102(-) A-I      intronic
chr5:179316198(-) A-I      intronic
chr5:179316234(-) A-I      intronic
chr5:179316246(-) A-I      intronic
chr5:179316300(-) A-I      intronic
chr5:179316630(-) A-I      intronic
chr5:179316755(-) A-I      intronic
chr5:179316791(-) A-I      intronic
chr5:179316812(-) A-I      intronic
chr5:179325150(-) A-I      intronic
chr5:179328663(-) A-I      intronic
chr5:179328680(-) A-I      intronic
chr5:179331235(-) A-I      intronic
chr5:179309182(-) A-I      intronic
chr5:179296993(-) A-I      intronic
chr5:179309114(-) A-I      intronic
chr5:179310084(-) A-I      intronic
chr5:179316708(-) A-I      intronic
chr5:179309639(-) A-I      intronic
chr5:179309618(-) A-I      intronic
chr5:179310013(-) A-I      intronic
chr5:179309728(-) A-I      intronic
chr5:179309987(-) A-I      intronic
chr5:179309042(-) A-I      intronic
chr5:179309684(-) A-I      intronic
chr5:179316774(-) A-I      intronic
chr5:179310028(-) A-I      intronic
chr5:179309792(-) A-I      intronic
chr5:179325724(-) A-I      intronic
chr5:179316704(-) A-I      intronic
chr5:179309767(-) A-I      intronic
chr5:179309211(-) A-I      intronic
chr5:179316817(-) A-I      intronic
chr5:179309722(-) A-I      intronic
chr5:179316773(-) A-I      intronic
chr5:179310035(-) A-I      intronic
chr5:179312398(-) A-I      intronic
chr5:179309997(-) A-I      intronic
chr5:179310131(-) A-I      intronic
chr5:179316162(-) A-I      intronic
chr5:179309083(-) A-I      intronic
chr5:179316640(-) A-I      intronic
chr5:179309037(-) A-I      intronic
chr5:179309967(-) A-I      intronic
chr5:179309693(-) A-I      intronic
chr5:179309763(-) A-I      intronic
chr5:179309169(-) A-I      intronic
chr5:179309609(-) A-I      intronic
chr5:179309176(-) A-I      intronic
chr5:179309661(-) A-I      intronic
chr5:179310027(-) A-I      intronic
chr5:179310029(-) A-I      intronic
chr5:179331389(-) A-I      intronic
chr5:179309961(-) A-I      intronic
chr5:179322152(-) A-I      intronic
chr5:179316858(-) A-I      intronic
chr5:179316106(-) A-I      intronic
chr5:179309766(-) A-I      intronic
chr5:179316097(-) A-I      intronic
chr5:179316706(-) A-I      intronic
chr5:179309652(-) A-I      intronic
chr5:179310096(-) A-I      intronic
chr5:179325059(-) A-I      intronic
chr5:179331497(-) A-I      intronic
chr5:179310132(-) A-I      intronic
chr5:179310101(-) A-I      intronic
chr5:179312451(-) A-I      intronic
chr5:179312513(-) A-I      intronic
chr5:179316151(-) A-I      intronic
chr5:179309664(-) A-I      intronic
chr5:179310083(-) A-I      intronic
chr5:179309073(-) A-I      intronic
chr5:179316233(-) A-I      intronic
chr5:179316762(-) A-I      intronic
chr5:179316301(-) A-I      intronic
chr5:179309927(-) A-I      intronic
chr5:179328722(-) A-I      intronic
chr5:179312467(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TBC1D9B
chr5:179309065(-) A-I intron -    15342557
chr5:179310013(-) A-I intron -    15342557
chr5:179310024(-) A-I intron -    15342557
chr5:179310028(-) A-I intron -    15342557
chr5:179310029(-) A-I intron -    15342557
chr5:179310034(-) A-I intron -    15342557
chr5:179310035(-) A-I intron -    15342557
chr5:179310036(-) A-I intron -    15342557
chr5:179310083(-) A-I intron -    15342557
chr5:179310084(-) A-I intron -    15342557
chr5:179310096(-) A-I intron -    15342557
chr5:179310101(-) A-I intron -    15342557
chr5:179316814(-) A-I intron -    21960545   //22327324
chr5:179309618(-) A-I intron -    21960545
chr5:179309702(-) A-I intron -    21960545
chr5:179295057(-) A-T intron -    22484847
chr5:179309042(-) A-G intron -    22484847
chr5:179309211(-) A-G intron -    22484847
chr5:179309609(-) A-G intron -    22484847
chr5:179309618(-) A-G intron -    22484847
chr5:179309628(-) A-G intron -    22484847
chr5:179309684(-) A-G intron -    22484847
chr5:179309702(-) A-G intron -    22484847
chr5:179309728(-) A-G intron -    22484847
chr5:179309738(-) A-G intron -    22484847
chr5:179309763(-) A-G intron -    22484847
chr5:179309766(-) A-G intron -    22484847
chr5:179309773(-) A-G intron -    22484847
chr5:179309961(-) A-G intron -    22484847
chr5:179309987(-) A-G intron -    22484847
chr5:179310013(-) A-G intron -    22484847
chr5:179310023(-) A-G intron -    22484847
chr5:179310027(-) A-G intron -    22484847
chr5:179310028(-) A-G intron -    22484847
chr5:179310034(-) A-G intron -    22484847
chr5:179310035(-) A-G intron -    22484847
chr5:179312595(-) T-G intron -    22484847
chr5:179316097(-) A-G intron -    22484847
chr5:179316106(-) A-G intron -    22484847
chr5:179316151(-) A-G intron -    22484847
chr5:179316162(-) A-G intron -    22484847
chr5:179316233(-) A-G intron -    22484847
chr5:179316301(-) A-G intron -    22484847
chr5:179316640(-) A-G intron -    22484847
chr5:179316700(-) A-G intron -    22484847
chr5:179316706(-) A-G intron -    22484847
chr5:179316753(-) A-G intron -    22484847
chr5:179316762(-) A-G intron -    22484847
chr5:179316814(-) A-G intron -    22484847
chr5:179316817(-) A-G intron -    22484847
chr5:179316858(-) A-G intron -    22484847
chr5:179322152(-) A-G intron -    22484847
chr5:179328722(-) A-G intron -    22484847
chr5:179332918(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TBC1D9B
chr5:179289185-179289186(-) m6A 3'UTR//exon       27773535
chr5:179289202-179289203(-) m6A 3'UTR//exon       27773535
chr5:179289222-179289223(-) m6A 3'UTR//exon       27773535
chr5:179289227-179289228(-) m6A 3'UTR//exon       27773535
chr5:179289332-179289333(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085
chr5:179289411-179289412(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828
chr5:179289416-179289417(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828
chr5:179289570-179289571(-) m6A 3'UTR//CDS//exon       24284625
chr5:179289633-179289634(-) m6A 3'UTR//exon//intron       24284625
chr5:179289737-179289738(-) m6A 3'UTR//exon//intron       24284625//27773535
chr5:179289835-179289836(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr5:179289924-179289925(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr5:179289935-179289936(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr5:179289951-179289952(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr5:179289978-179289979(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr5:179290278-179290279(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863
chr5:179290293-179290294(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863
chr5:179290495-179290496(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:179290509-179290510(-) Am CDS//exon//intron       -
chr5:179290514-179290515(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:179290528-179290529(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:179290535-179290536(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:179290556-179290557(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:179290694-179290695(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:179290758-179290759(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:179290795-179290796(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:179290859-179290860(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:179290883-179290884(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:179290930-179290931(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:179290967-179290968(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:179291063-179291064(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr5:179291078-179291079(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr5:179292257-179292258(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr5:179292335-179292336(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//27773536
chr5:179292348-179292349(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//27773536
chr5:179292441-179292442(-) m6A exon//intron       24284625//24981863//27773535//27371828//27773536
chr5:179292804-179292805(-) m6A exon//intron       24981863
chr5:179292955-179292956(-) m6A exon//intron       24284625//24981863//27773535//27371828
chr5:179292969-179292970(-) m6A exon//intron       24284625//24981863//27773535//27371828
chr5:179292975-179292976(-) m6A exon//intron       24284625//27773535//27371828
chr5:179293457-179293458(-) m6A exon//intron       27773536
chr5:179293514-179293515(-) m6A exon//intron       27773536
chr5:179293537-179293538(-) m6A exon//intron       27773536
chr5:179293622-179293623(-) m6A exon//intron       27773536
chr5:179294127-179294128(-) m6A exon//intron       -
chr5:179294163-179294164(-) m6A exon//intron       -
chr5:179294189-179294190(-) m6A exon//intron       -
chr5:179294311-179294312(-) m6A exon//intron       -
chr5:179294344-179294345(-) m6A exon//intron       -
chr5:179294760-179294761(-) m6A exon//intron       24981863//27773535
chr5:179294791-179294792(-) m6A CDS//exon//intron       24284625//24981863//27773535
chr5:179295373-179295374(-) m6A exon//intron       22608085
chr5:179295396-179295397(-) m6A exon//intron       22608085
chr5:179295476-179295477(-) m6A exon//intron       24284625//25456834//27371828//22608085
chr5:179295495-179295496(-) m6A exon//intron       24284625//25456834//27371828//22608085
chr5:179295529-179295530(-) m6A exon//intron       24284625//25456834//27371828//22608085
chr5:179295711-179295712(-) m6A exon//intron       24284625//27371828//22608085
chr5:179295759-179295760(-) m6A exon//intron       24284625//24981863//27371828
chr5:179295810-179295811(-) m6A exon//intron       24284625//24981863
chr5:179295819-179295820(-) m6A exon//intron       24284625//24981863
chr5:179295861-179295862(-) m6A exon//intron       -
chr5:179296521-179296522(-) m6A exon//intron       27371828
chr5:179296687-179296688(-) m6A exon//intron       24284625//27371828//27773536
chr5:179296702-179296703(-) m6A exon//intron       24284625//24209618//27371828//27773536
chr5:179296815-179296816(-) m6A CDS//exon//intron       24284625//27773535//27773536
chr5:179297292-179297293(-) m6A CDS//exon//intron       24284625//27773535//27773536
chr5:179297298-179297299(-) m6A CDS//exon//intron       24284625//27773535//27773536
chr5:179297381-179297382(-) m6A CDS//exon//intron       24284625//27773535
chr5:179297436-179297437(-) m6A CDS//exon//intron       24284625//27773535
chr5:179297508-179297509(-) m6A exon//intron       24284625//27773535
chr5:179297521-179297522(-) m6A exon//intron       24284625//27773535
chr5:179297570-179297571(-) m6A exon//intron       27773535
chr5:179297587-179297588(-) m6A exon//intron       27773535
chr5:179298766-179298767(-) m6A 5'UTR//exon//intron       27371828//27773536
chr5:179298907-179298908(-) m6A exon//intron       27371828//27773536
chr5:179299964-179299965(-) m6A CDS//exon//intron       24284625
chr5:179300149-179300150(-) m6A CDS//intron       24284625
chr5:179302111-179302112(-) m6A CDS//exon//intron       24284625
chr5:179302144-179302145(-) m6A CDS//exon//intron       24284625
chr5:179302174-179302175(-) m6A CDS//exon//intron       24284625
chr5:179303029-179303030(-) m6A CDS//exon//intron       24284625
chr5:179305330-179305331(-) m6A CDS//exon//intron       24284625//27773535
chr5:179305423-179305424(-) m6A CDS//exon//intron       24284625
chr5:179306643-179306644(-) m6A CDS//exon//intron       24284625//25456834//27371828//27773536
chr5:179306658-179306659(-) m6A CDS//exon//intron       24284625//25456834//27371828//27773536
chr5:179311525-179311526(-) m6A exon//intron       27773535
chr5:179314695-179314696(-) m6A exon//intron       27773535
chr5:179314722-179314723(-) m6A exon//intron       27773535
chr5:179314854-179314855(-) m6A exon//intron       24284625//24209618//24981863//27773535//27371828
chr5:179315115-179315116(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828
chr5:179315167-179315168(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828
chr5:179315211-179315212(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828
chr5:179318583-179318584(-) m6A CDS//exon//intron       24284625//27773536
chr5:179320226-179320227(-) m6A CDS//exon//intron       24284625//27773536
chr5:179320262-179320263(-) m6A CDS//intron       24284625//27773536//22575960
chr5:179320283-179320284(-) m6A CDS//intron       24284625//27773536//22575960
chr5:179320335-179320336(-) m6A CDS//intron       22575960
chr5:179320385-179320386(-) m6A CDS//intron       22575960
chr5:179321535-179321536(-) Am 3'UTR//CDS       -
chr5:179331730-179331731(-) m6A CDS       24284625//27773536
chr5:179331737-179331738(-) m6A CDS       24284625//27773536
chr5:179331778-179331779(-) m6A CDS       24284625//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-12-3p
Exosome Primary dendritic cells     21505438
TBC1D9B
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-12-3p
Interactor2: TBC1D9B

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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