Detail Information

Basic Information:


  VIRBase ID:  

VHID00499010

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-3p:           TOB2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-12-3p TOB2
miRBase
Accession/Entrez ID		 MIMAT0015238 10766
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - APRO5//TOB4//TOBL//TROB2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TOB2
chr22:41833774(-) A-I      intronic
chr22:41833797(-) A-I      intronic
chr22:41833830(-) A-I      intronic
chr22:41836844(-) A-I      intronic
chr22:41836835(-) A-I      intronic
chr22:41836790(-) A-I      intronic
chr22:41837634(-) A-I      intronic
chr22:41839452(-) A-I      intronic
chr22:41834389(-) A-I      intronic
chr22:41833871(-) A-I      intronic
chr22:41836795(-) A-I      intronic
chr22:41836686(-) A-I      intronic
chr22:41836572(-) A-I      intronic
chr22:41836169(-) A-I      intronic
chr22:41836647(-) A-I      intronic
chr22:41836738(-) A-I      intronic
chr22:41836740(-) A-I      intronic
chr22:41833939(-) A-I      intronic
chr22:41836324(-) A-I      intronic
chr22:41836297(-) A-I      intronic
chr22:41836286(-) A-I      intronic
chr22:41836243(-) A-I      intronic
chr22:41836207(-) A-I      intronic
chr22:41836189(-) A-I      intronic
chr22:41835787(-) A-I      intronic
chr22:41835784(-) A-I      intronic
chr22:41835766(-) A-I      intronic
chr22:41835738(-) A-I      intronic
chr22:41835721(-) A-I      intronic
chr22:41835702(-) A-I      intronic
chr22:41835698(-) A-I      intronic
chr22:41835695(-) A-I      intronic
chr22:41835680(-) A-I      intronic
chr22:41835644(-) A-I      intronic
chr22:41834534(-) A-I      intronic
chr22:41834512(-) A-I      intronic
chr22:41834510(-) A-I      intronic
chr22:41834461(-) A-I      intronic
chr22:41836692(-) A-I      intronic
chr22:41834376(-) A-I      intronic
chr22:41836282(-) A-I      intronic
chr22:41836931(-) A-I      intronic
chr22:41839551(-) A-I      intronic
chr22:41839820(-) A-I      intronic
chr22:41836430(-) A-I      intronic
chr22:41839902(-) A-I      intronic
chr22:41835622(-) A-I      intronic
chr22:41833762(-) A-I      intronic
chr22:41833845(-) A-I      intronic
chr22:41836633(-) A-I      intronic
chr22:41837140(-) A-I      intronic
chr22:41837736(-) A-I      intronic
chr22:41838032(-) A-I      intronic
chr22:41836709(-) A-I      intronic
chr22:41836843(-) A-I      intronic
chr22:41837750(-) A-I      intronic
chr22:41836817(-) A-I      intronic
chr22:41835588(-) A-I      intronic
chr22:41838012(-) A-I      intronic
chr22:41837297(-) A-I      intronic
chr22:41836789(-) A-I      intronic
chr22:41837995(-) A-I      intronic
chr22:41837869(-) A-I      intronic
chr22:41835697(-) A-I      intronic
chr22:41839800(-) A-I      intronic
chr22:41837065(-) A-I      intronic
chr22:41836907(-) A-I      intronic
chr22:41839432(-) A-I      intronic
chr22:41839421(-) A-I      intronic
chr22:41838019(-) A-I      intronic
chr22:41835572(-) A-I      intronic
chr22:41833788(-) A-I      intronic
chr22:41836289(-) A-I      intronic
chr22:41836540(-) A-I      intronic
chr22:41837832(-) A-I      intronic
chr22:41836515(-) A-I      intronic
chr22:41836820(-) A-I      intronic
chr22:41836908(-) A-I      intronic
chr22:41837983(-) A-I      intronic
chr22:41836393(-) A-I      intronic
chr22:41834388(-) A-I      intronic
chr22:41836695(-) A-I      intronic
chr22:41837565(-) A-I      intronic
chr22:41836327(-) A-I      intronic
chr22:41837591(-) A-I      intronic
chr22:41838081(-) A-I      intronic
chr22:41838051(-) A-I      intronic
chr22:41838013(-) A-I      intronic
chr22:41836260(-) A-I      intronic
chr22:41835617(-) A-I      intronic
chr22:41839700(-) A-I      intronic
chr22:41836699(-) A-I      intronic
chr22:41835747(-) A-I      intronic
chr22:41835587(-) A-I      intronic
chr22:41837236(-) A-I      intronic
chr22:41835636(-) A-I      intronic
chr22:41835699(-) A-I      intronic
chr22:41834467(-) A-I      intronic
chr22:41836194(-) A-I      intronic
chr22:41837117(-) A-I      intronic
chr22:41837197(-) A-I      intronic
chr22:41837132(-) A-I      intronic
chr22:41839824(-) A-I      intronic
chr22:41837974(-) A-I      intronic
chr22:41837620(-) A-I      intronic
chr22:41839352(-) A-I      intronic
chr22:41836250(-) A-I      intronic
chr22:41836731(-) A-I      intronic
chr22:41836748(-) A-I      intronic
chr22:41839550(-) A-I      intronic
chr22:41836927(-) A-I      intronic
chr22:41839464(-) A-I      intronic
chr22:41835609(-) A-I      intronic
chr22:41833872(-) A-I      intronic
chr22:41839765(-) A-I      intronic
chr22:41836643(-) A-I      intronic
chr22:41837947(-) A-I      intronic
chr22:41839903(-) A-I      intronic
chr22:41836747(-) A-I      intronic
chr22:41836550(-) A-I      intronic
chr22:41835733(-) A-I      intronic
chr22:41839859(-) A-I      intronic
chr22:41836735(-) A-I      intronic
chr22:41833805(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TOB2
chr22:41836695(-) A-I intron -    22327324
chr22:41833788(-) A-G intron -    22484847
chr22:41833806(-) A-G intron -    22484847
chr22:41835572(-) A-G intron -    22484847
chr22:41835609(-) A-G intron -    22484847
chr22:41836695(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TOB2
chr22:41829576-41829577(-) m6A 3'UTR       27773535
chr22:41829581-41829582(-) m6A 3'UTR       27773535
chr22:41829613-41829614(-) m6A 3'UTR       24981863//28052920//27773535
chr22:41829688-41829689(-) m6A 3'UTR       24981863//28052920//27773535
chr22:41829814-41829815(-) m6A 3'UTR       24981863//27773535
chr22:41830425-41830426(-) m6A 3'UTR       24284625//27773535
chr22:41830496-41830497(-) m6A 3'UTR       24284625//27773535
chr22:41830638-41830639(-) m6A 3'UTR       24284625//27773535
chr22:41830764-41830765(-) m6A 3'UTR       24284625//27773535
chr22:41831870-41831871(-) m6A 3'UTR       24284625//24981863//27773535//27371828
chr22:41831957-41831958(-) Y 3'UTR       26075521
chr22:41831979-41831980(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr22:41832278-41832279(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr22:41832366-41832367(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr22:41832400-41832401(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr22:41832627-41832628(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr22:41832909-41832910(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr22:41832967-41832968(-) Gm CDS       -
chr22:41832972-41832973(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr22:41833155-41833156(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr22:41833272-41833273(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr22:41833320-41833321(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr22:41833351-41833352(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr22:41842387-41842388(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr22:41842509-41842510(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536
chr22:41842671-41842672(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr22:41842718-41842719(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr22:41842820-41842821(-) m6A 5'UTR       25456834//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate kshv-miR-K12-12-3p
Exosome Primary dendritic cells     21505438
TOB2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-12-3p
Interactor2: TOB2

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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