Basic Information:

  VIRBase ID:  

VHID00498934

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-12-3p:  MIMAT0015238          CTDSPL:  NM_005808     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-12-3p	CTDSPL
miRBase Accession/Entrez ID	MIMAT0015238	10217
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C3orf8//HYA22//PSR1//RBSP3//SCP3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CTDSPL	chr3:38017969(+) A-I      intronic chr3:38017967(+) A-I      intronic chr3:38017945(+) A-I      intronic chr3:37922770(+) A-I      intronic chr3:38017992(+) A-I      intronic chr3:38017979(+) A-I      intronic chr3:38017975(+) A-I      intronic chr3:37990493(+) A-I      intronic chr3:37922773(+) A-I      intronic chr3:37923570(+) A-I      intronic chr3:37971397(+) A-I      intronic chr3:37971775(+) A-I      intronic chr3:37972039(+) A-I      intronic chr3:37972861(+) A-I      intronic chr3:37989001(+) A-I      intronic chr3:37989041(+) A-I      intronic chr3:37990510(+) A-I      intronic chr3:37990518(+) A-I      intronic chr3:37990522(+) A-I      intronic chr3:38017968(+) A-I      intronic chr3:38017965(+) A-I      intronic chr3:38017961(+) A-I      intronic chr3:38017944(+) A-I      intronic chr3:38017936(+) A-I      intronic chr3:37972081(+) A-I      intronic chr3:37972048(+) A-I      intronic chr3:37972009(+) A-I      intronic chr3:37918490(+) A-I      intronic chr3:37918410(+) A-I      intronic chr3:37918477(+) A-I      intronic chr3:37918447(+) A-I      intronic chr3:37918390(+) A-I      intronic chr3:37918401(+) A-I      intronic chr3:37918454(+) A-I      intronic chr3:37918343(+) A-I      intronic chr3:37983064(+) A-I      intronic chr3:37918450(+) A-I      intronic chr3:37918344(+) A-I      intronic chr3:37935588(+) A-I      intronic chr3:37918543(+) A-I      intronic chr3:37913562(+) A-I      intronic chr3:37918518(+) A-I      intronic chr3:37971491(+) A-I      intronic chr3:37918411(+) A-I      intronic chr3:37918444(+) A-I      intronic chr3:37972040(+) A-I      intronic chr3:37918379(+) A-I      intronic chr3:37918421(+) A-I      intronic chr3:37918437(+) A-I      intronic chr3:37980272(+) A-I      intronic chr3:37983055(+) A-I      intronic chr3:37914192(+) A-I      intronic chr3:37983906(+) A-I      intronic chr3:37983067(+) A-I      intronic chr3:37971519(+) A-I      intronic chr3:38021164(+) A-I      intronic chr3:37951887(+) A-I      intronic chr3:37988800(+) A-I      intronic chr3:37954822(+) A-I      intronic chr3:37935631(+) A-I      intronic chr3:37972036(+) A-I      intronic chr3:37989000(+) A-I      intronic chr3:37992588(+) A-I      intronic chr3:37938304(+) A-I      intronic chr3:38001651(+) A-I      intronic chr3:37918547(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CTDSPL	chr3:37918343(+) A-I intron -    22028664 chr3:37918344(+) A-I intron -    22028664 chr3:37918379(+) A-I intron -    22028664 chr3:37918390(+) A-I intron -    22028664 chr3:37918401(+) A-I intron -    22028664 chr3:37918410(+) A-I intron -    22028664 chr3:37918411(+) A-I intron -    22028664 chr3:37918421(+) A-I intron -    22028664 chr3:37918437(+) A-I intron -    22028664 chr3:37918444(+) A-I intron -    22028664 chr3:37918447(+) A-I intron -    22028664 chr3:37918450(+) A-I intron -    22028664 chr3:37918454(+) A-I intron -    22028664 chr3:37918477(+) A-I intron -    22028664 chr3:37918490(+) A-I intron -    22028664 chr3:37918503(+) A-I intron -    22028664 chr3:37918518(+) A-I intron -    22028664 chr3:37918543(+) A-I intron -    22028664

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CTDSPL	chr3:38022266-38022267(+) m6A CDS//exon       24284625//24981863 chr3:38022281-38022282(+) m6A CDS//exon       24284625//24981863 chr3:38022342-38022343(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr3:38022396-38022397(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr3:38022413-38022414(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr3:38022515-38022516(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085 chr3:38022521-38022522(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085 chr3:38022538-38022539(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085 chr3:38022564-38022565(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085 chr3:38022596-38022597(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085 chr3:38022653-38022654(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr3:38022685-38022686(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr3:38024579-38024580(+) m6A 3'UTR//intron       24284625 chr3:38024646-38024647(+) m6A 3'UTR//intron       24284625 chr3:38025392-38025393(+) m6A 3'UTR//intron       24981863 chr3:38025441-38025442(+) m6A 3'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-12-3p	Exosome Primary dendritic cells     21505438
	CTDSPL	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-12-3p
Interactor2: CTDSPL

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg