Basic Information:

  VIRBase ID:  

VHID00497399

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          SLC13A5:  NM_001284510     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	SLC13A5
miRBase Accession/Entrez ID	MIMAT0015218	284111
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DEE25//EIEE25//INDY//mIndy//NACT

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC13A5	chr17:6597770(-) A-I      intronic chr17:6597789(-) A-I      intronic chr17:6597678(-) A-I      intronic chr17:6597825(-) A-I      intronic chr17:6597924(-) A-I      intronic chr17:6597891(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC13A5	chr17:6588127-6588128(-) m6A 3'UTR//exon       27773535 chr17:6588139-6588140(-) m6A 3'UTR//exon       27773535 chr17:6588271-6588272(-) m6A 3'UTR//exon       25456834//27773535 chr17:6588284-6588285(-) m6A 3'UTR//exon       25456834//27773535 chr17:6588299-6588300(-) m6A 3'UTR//exon       25456834//27773535 chr17:6588347-6588348(-) m6A 3'UTR//exon       25456834//27773535 chr17:6588353-6588354(-) m6A 3'UTR//exon       25456834//27773535 chr17:6588394-6588395(-) m6A 3'UTR//exon       27773535 chr17:6588945-6588946(-) m6A 3'UTR//exon       27773535 chr17:6589291-6589292(-) m6A 3'UTR//exon       27773535 chr17:6589311-6589312(-) m6A 3'UTR//exon       27773535 chr17:6589397-6589398(-) m6A 3'UTR//exon       27773535 chr17:6589473-6589474(-) m6A 3'UTR//exon       27773535 chr17:6589481-6589482(-) m6A 3'UTR//exon       27773535 chr17:6589511-6589512(-) m6A 3'UTR//exon       27773535 chr17:6589530-6589531(-) m6A CDS//exon       27773535 chr17:6589634-6589635(-) m6A CDS//exon       27773535 chr17:6591386-6591387(-) m6A exon//intron       27773535 chr17:6592750-6592751(-) m6A exon//intron       27773535 chr17:6592763-6592764(-) m6A exon//intron       27773535 chr17:6592770-6592771(-) m6A exon//intron       27773535 chr17:6593061-6593062(-) m6A exon//intron       27773535 chr17:6593125-6593126(-) m6A exon//intron       27773535 chr17:6593146-6593147(-) m6A exon//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC13A5	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: SLC13A5

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg