Basic Information:

  VIRBase ID:  

VHID00497319

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          GPR156:  NM_153002     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	GPR156
miRBase Accession/Entrez ID	MIMAT0015218	165829
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GABABL//PGR28

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPR156	chr3:119892664(-) A-I      intronic chr3:119897343(-) A-I      intronic chr3:119892699(-) A-I      intronic chr3:119987539(-) A-I      intronic chr3:119948896(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPR156	chr3:119883713-119883714(-) m6A 3'UTR       24209618//27773535 chr3:119883763-119883764(-) m6A 3'UTR       24209618//27773535 chr3:119883863-119883864(-) m6A 3'UTR       24209618 chr3:119883870-119883871(-) m6A 3'UTR       24209618 chr3:119883879-119883880(-) m6A 3'UTR       24209618 chr3:119883888-119883889(-) m6A 3'UTR       24209618 chr3:119883903-119883904(-) m6A 3'UTR       24209618 chr3:119883947-119883948(-) m6A 3'UTR       24209618 chr3:119884020-119884021(-) m6A 3'UTR       24209618 chr3:119884081-119884082(-) m6A 3'UTR       24209618 chr3:119884604-119884605(-) m6A 3'UTR       27773535 chr3:119884666-119884667(-) m6A 3'UTR       24209618//25456834//27773535 chr3:119884720-119884721(-) m6A 3'UTR       24209618//25456834//27773535 chr3:119884746-119884747(-) m6A 3'UTR       24209618//25456834//27773535 chr3:119884772-119884773(-) m6A 3'UTR       24209618//25456834//27773535//22608085 chr3:119884829-119884830(-) m6A 3'UTR       24209618//25456834//27773535//22608085 chr3:119884847-119884848(-) m6A 3'UTR       24209618//25456834//27773535//22608085 chr3:119884934-119884935(-) m6A 3'UTR       24209618//27773535 chr3:119884946-119884947(-) m6A 3'UTR       24209618//27773535 chr3:119884954-119884955(-) m6A 3'UTR       24209618//27773535 chr3:119884963-119884964(-) m6A 3'UTR       24209618//27773535 chr3:119884996-119884997(-) m6A 3'UTR       24209618//27773535 chr3:119885004-119885005(-) m6A 3'UTR       24209618//27773535 chr3:119885058-119885059(-) m6A 3'UTR       24209618//27773535 chr3:119885234-119885235(-) m6A 3'UTR       24209618//27773535 chr3:119885315-119885316(-) m6A 3'UTR       24209618//27773535 chr3:119885348-119885349(-) m6A 3'UTR       24209618//27773535 chr3:119885435-119885436(-) m6A 3'UTR       24209618//25456834//27773535//22575960 chr3:119885451-119885452(-) m6A 3'UTR       24209618//25456834//27773535//22575960//22608085 chr3:119885466-119885467(-) m6A 3'UTR       24209618//25456834//27773535//22575960//22608085 chr3:119885479-119885480(-) m6A 3'UTR       24209618//25456834//27773535//22575960//22608085 chr3:119885517-119885518(-) m6A 3'UTR       24209618//25456834//27773535//22575960//22608085 chr3:119885550-119885551(-) m6A 3'UTR       24209618//25456834//27773535//22575960//22608085 chr3:119885592-119885593(-) m6A 3'UTR       24209618//25456834//27773535//22608085 chr3:119885625-119885626(-) m6A 3'UTR       24209618 chr3:119885856-119885857(-) m6A 3'UTR       24209618//25456834 chr3:119885893-119885894(-) m6A 3'UTR//CDS       24209618//25456834//22608085 chr3:119885912-119885913(-) m6A 3'UTR//CDS       24209618//25456834//22608085 chr3:119885984-119885985(-) m6A 3'UTR//CDS       24209618//25456834 chr3:119886378-119886379(-) m6A 3'UTR//CDS       24209618 chr3:119886401-119886402(-) m6A 3'UTR//CDS       24209618 chr3:119886679-119886680(-) m6A 3'UTR//CDS       24209618//27773535 chr3:119886734-119886735(-) m6A 3'UTR//CDS       24209618//25456834//27773535 chr3:119886751-119886752(-) m6A 3'UTR//CDS       24209618//25456834//27773535 chr3:119886800-119886801(-) m6A 3'UTR//CDS       24209618//25456834//24981863//27773535 chr3:119886815-119886816(-) m6A 3'UTR//CDS       24209618//25456834//24981863//27773535 chr3:119886846-119886847(-) m6A 3'UTR//CDS       24209618//25456834//24981863//27773535//22608085 chr3:119886872-119886873(-) m6A 3'UTR//CDS       24209618//25456834//24981863//27773535//22608085 chr3:119886890-119886891(-) m6A 3'UTR//CDS       24209618//25456834//24981863//27773535 chr3:119886938-119886939(-) m6A 3'UTR//CDS       24209618//25456834 chr3:119892280-119892281(-) m6A 3'UTR//CDS       27773535 chr3:119892285-119892286(-) m6A 3'UTR//CDS       27773535 chr3:119961792-119961793(-) m6A exon//intron       27773535 chr3:119961801-119961802(-) m6A exon//intron       27773535 chr3:119961996-119961997(-) m6A exon//intron       25456834//27773535 chr3:119962157-119962158(-) m6A exon//intron       24209618//27773535 chr3:119962170-119962171(-) m6A exon//intron       24209618//27773535 chr3:119962178-119962179(-) m6A exon//intron       27773535 chr3:119962189-119962190(-) m6A exon//intron       27773535 chr3:119962857-119962858(-) m6A CDS//exon       22608085 chr3:119962879-119962880(-) m6A CDS//exon       22608085 chr3:119962928-119962929(-) m6A CDS//exon       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPR156	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: GPR156

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg