Basic Information:

  VIRBase ID:  

VHID00497290

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          TTL:  NM_001371712     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	TTL
miRBase Accession/Entrez ID	MIMAT0015218	150465
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TTL	chr2:113247809(+) A-I      intronic chr2:113247764(+) A-I      intronic chr2:113247759(+) A-I      intronic chr2:113254579(+) A-I      intronic chr2:113285944(+) A-I      intronic chr2:113269246(+) A-I      intronic chr2:113271760(+) A-I      intronic chr2:113271705(+) A-I      intronic chr2:113271697(+) A-I      intronic chr2:113269357(+) A-I      intronic chr2:113271728(+) A-I      intronic chr2:113250417(+) A-I      intronic chr2:113250413(+) A-I      intronic chr2:113250364(+) A-I      intronic chr2:113271712(+) A-I      intronic chr2:113247817(+) A-I      intronic chr2:113242774(+) A-I      intronic chr2:113246619(+) A-I      intronic chr2:113246506(+) A-I      intronic chr2:113246499(+) A-I      intronic chr2:113248379(+) A-I      intronic chr2:113246488(+) A-I      intronic chr2:113242807(+) A-I      intronic chr2:113250272(+) A-I      intronic chr2:113277610(+) A-I      intronic chr2:113250380(+) A-I      intronic chr2:113250425(+) A-I      intronic chr2:113249978(+) A-I      intronic chr2:113250120(+) A-I      intronic chr2:113250122(+) A-I      intronic chr2:113275817(+) A-I      intronic chr2:113275795(+) A-I      intronic chr2:113254437(+) A-I      intronic chr2:113254467(+) A-I      intronic chr2:113255832(+) A-I      intronic chr2:113256339(+) A-I      intronic chr2:113268148(+) A-I      intronic chr2:113268619(+) A-I      intronic chr2:113269283(+) A-I      intronic chr2:113269387(+) A-I      intronic chr2:113269416(+) A-I      intronic chr2:113269422(+) A-I      intronic chr2:113270208(+) A-I      intronic chr2:113270236(+) A-I      intronic chr2:113271683(+) A-I      intronic chr2:113271746(+) A-I      intronic chr2:113271879(+) A-I      intronic chr2:113271894(+) A-I      intronic chr2:113271910(+) A-I      intronic chr2:113242779(+) A-I      intronic chr2:113273270(+) A-I      intronic chr2:113273381(+) A-I      intronic chr2:113274104(+) A-I      intronic chr2:113274171(+) A-I      intronic chr2:113274230(+) A-I      intronic chr2:113275006(+) A-I      intronic chr2:113275712(+) A-I      intronic chr2:113275776(+) A-I      intronic chr2:113277656(+) A-I      intronic chr2:113277652(+) A-I      intronic chr2:113277628(+) A-I      intronic chr2:113277613(+) A-I      intronic chr2:113277552(+) A-I      intronic chr2:113277493(+) A-I      intronic chr2:113254537(+) A-I      intronic chr2:113277458(+) A-I      intronic chr2:113277453(+) A-I      intronic chr2:113277434(+) A-I      intronic chr2:113276520(+) A-I      intronic chr2:113276435(+) A-I      intronic chr2:113275819(+) A-I      intronic chr2:113246629(+) A-I      intronic chr2:113247806(+) A-I      intronic chr2:113248009(+) A-I      intronic chr2:113248274(+) A-I      intronic chr2:113248359(+) A-I      intronic chr2:113288577(+) A-I      3'UTR chr2:113275468(+) A-I      intronic chr2:113247907(+) A-I      intronic chr2:113261067(+) A-I      intronic chr2:113248278(+) A-I      intronic chr2:113273269(+) A-I      intronic chr2:113247904(+) A-I      intronic chr2:113277616(+) A-I      intronic chr2:113254362(+) A-I      intronic chr2:113248686(+) A-I      intronic chr2:113248643(+) A-I      intronic chr2:113271741(+) A-I      intronic chr2:113254429(+) A-I      intronic chr2:113250428(+) A-I      intronic chr2:113277657(+) A-I      intronic chr2:113248726(+) A-I      intronic chr2:113273998(+) A-I      intronic chr2:113246553(+) A-I      intronic chr2:113242032(+) A-I      intronic chr2:113275687(+) A-I      intronic chr2:113270140(+) A-I      intronic chr2:113275418(+) A-I      intronic chr2:113248782(+) A-I      intronic chr2:113274942(+) A-I      intronic chr2:113268626(+) A-I      intronic chr2:113275578(+) A-I      intronic chr2:113242692(+) A-I      intronic chr2:113271809(+) A-I      intronic chr2:113271751(+) A-I      intronic chr2:113276352(+) A-I      intronic chr2:113271794(+) A-I      intronic chr2:113242122(+) A-I      intronic chr2:113261111(+) A-I      intronic chr2:113248638(+) A-I      intronic chr2:113273361(+) A-I      intronic chr2:113254421(+) A-I      intronic chr2:113241864(+) A-I      intronic chr2:113246215(+) A-I      intronic chr2:113246080(+) A-I      intronic chr2:113261033(+) A-I      intronic chr2:113271848(+) A-I      intronic chr2:113276474(+) A-I      intronic chr2:113277543(+) A-I      intronic chr2:113274192(+) A-I      intronic chr2:113271812(+) A-I      intronic chr2:113275100(+) A-I      intronic chr2:113261008(+) A-I      intronic chr2:113248672(+) A-I      intronic chr2:113286123(+) A-I      intronic chr2:113248266(+) A-I      intronic chr2:113254491(+) A-I      intronic chr2:113247927(+) A-I      intronic chr2:113250187(+) A-I      intronic chr2:113277532(+) A-I      intronic chr2:113248219(+) A-I      intronic chr2:113250389(+) A-I      intronic chr2:113249976(+) A-I      intronic chr2:113249986(+) A-I      intronic chr2:113288660(+) A-I      3'UTR chr2:113288674(+) A-I      3'UTR chr2:113290065(+) A-I      3'UTR chr2:113288626(+) A-I      3'UTR chr2:113290169(+) A-I      3'UTR chr2:113277556(+) A-I      intronic chr2:113273430(+) A-I      intronic chr2:113248330(+) A-I      intronic chr2:113248775(+) A-I      intronic chr2:113242025(+) A-I      intronic chr2:113271788(+) A-I      intronic chr2:113248669(+) A-I      intronic chr2:113246220(+) A-I      intronic chr2:113242660(+) A-I      intronic chr2:113247936(+) A-I      intronic chr2:113242551(+) A-I      intronic chr2:113248424(+) A-I      intronic chr2:113247880(+) A-I      intronic chr2:113277587(+) A-I      intronic chr2:113246079(+) A-I      intronic chr2:113247945(+) A-I      intronic chr2:113246174(+) A-I      intronic chr2:113248249(+) A-I      intronic chr2:113248753(+) A-I      intronic chr2:113242707(+) A-I      intronic chr2:113248290(+) A-I      intronic chr2:113246576(+) A-I      intronic chr2:113254403(+) A-I      intronic chr2:113277619(+) A-I      intronic chr2:113246411(+) A-I      intronic chr2:113276321(+) A-I      intronic chr2:113275374(+) A-I      intronic chr2:113273465(+) A-I      intronic chr2:113277452(+) A-I      intronic chr2:113271908(+) A-I      intronic chr2:113247977(+) A-I      intronic chr2:113248779(+) A-I      intronic chr2:113278372(+) A-I      intronic chr2:113247875(+) A-I      intronic chr2:113269221(+) A-I      intronic chr2:113271832(+) A-I      intronic chr2:113246589(+) A-I      intronic chr2:113246170(+) A-I      intronic chr2:113275048(+) A-I      intronic chr2:113269383(+) A-I      intronic chr2:113273403(+) A-I      intronic chr2:113275287(+) A-I      intronic chr2:113242552(+) A-I      intronic chr2:113246256(+) A-I      intronic chr2:113246157(+) A-I      intronic chr2:113241980(+) A-I      intronic chr2:113250197(+) A-I      intronic chr2:113250348(+) A-I      intronic chr2:113248288(+) A-I      intronic chr2:113246214(+) A-I      intronic chr2:113248708(+) A-I      intronic chr2:113274964(+) A-I      intronic chr2:113248759(+) A-I      intronic chr2:113246119(+) A-I      intronic chr2:113242539(+) A-I      intronic chr2:113271873(+) A-I      intronic chr2:113275026(+) A-I      intronic chr2:113246085(+) A-I      intronic chr2:113248227(+) A-I      intronic chr2:113270154(+) A-I      intronic chr2:113248294(+) A-I      intronic chr2:113248347(+) A-I      intronic chr2:113247884(+) A-I      intronic chr2:113247743(+) A-I      intronic chr2:113246543(+) A-I      intronic chr2:113247874(+) A-I      intronic chr2:113275377(+) A-I      intronic chr2:113277560(+) A-I      intronic chr2:113269222(+) A-I      intronic chr2:113267450(+) A-I      intronic chr2:113261012(+) A-I      intronic chr2:113242737(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TTL	chr2:113248638(+) A-I intron -    22028664 chr2:113248643(+) A-I intron -    22028664 chr2:113248672(+) A-I intron -    22028664 chr2:113248673(+) A-I intron -    22028664 chr2:113248686(+) A-I intron -    22028664 chr2:113248708(+) A-I intron -    22028664 chr2:113248726(+) A-I intron -    22028664 chr2:113248750(+) A-I intron -    22028664 chr2:113248775(+) A-I intron -    22028664 chr2:113248779(+) A-I intron -    22028664 chr2:113248782(+) A-I intron -    22028664 chr2:113246079(+) A-G intron -    22484847 chr2:113246156(+) A-G intron -    22484847 chr2:113246157(+) A-G intron -    22484847 chr2:113246214(+) A-G intron -    22484847 chr2:113247874(+) A-G intron -    22484847 chr2:113247875(+) A-G intron -    22484847 chr2:113247880(+) A-G intron -    22484847 chr2:113248278(+) A-G intron -    22484847 chr2:113248288(+) A-G intron -    22484847 chr2:113248290(+) A-G intron -    22484847 chr2:113248622(+) A-G intron -    22484847 chr2:113254362(+) A-G intron -    22484847 chr2:113254491(+) A-G intron -    22484847 chr2:113268626(+) A-G intron -    22484847 chr2:113269221(+) A-G intron -    22484847 chr2:113269222(+) A-G intron -    22484847 chr2:113269383(+) A-G intron -    22484847 chr2:113270226(+) A-G intron -    22484847 chr2:113271699(+) A-G intron -    22484847 chr2:113271751(+) A-G intron -    22484847 chr2:113271848(+) A-G intron -    22484847 chr2:113271873(+) A-G intron -    22484847 chr2:113273377(+) A-G intron -    22484847 chr2:113274050(+) A-G intron -    22484847 chr2:113275418(+) A-G intron -    22484847 chr2:113275578(+) A-G intron -    22484847 chr2:113275687(+) A-G intron -    22484847 chr2:113276256(+) T-C intron -    22484847 chr2:113276321(+) A-G intron -    22484847 chr2:113277452(+) A-G intron -    22484847 chr2:113288660(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TTL	chr2:113240873-113240874(+) m6A exon//intron       24209618 chr2:113241062-113241063(+) m6A exon//intron       24209618//24981863//22608085 chr2:113241149-113241150(+) m6A exon//intron       24209618//24981863//22608085 chr2:113241193-113241194(+) m6A exon//intron       24209618//25456834//24981863//22608085 chr2:113241243-113241244(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr2:113241272-113241273(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr2:113241345-113241346(+) m6A exon//intron       24284625//24209618//24981863//22608085 chr2:113241400-113241401(+) m6A exon//intron       24209618//24981863//22608085 chr2:113241410-113241411(+) m6A exon//intron       24209618//24981863//22608085 chr2:113241436-113241437(+) m6A exon//intron       24209618//24981863//22608085 chr2:113241478-113241479(+) m6A exon//intron       24209618 chr2:113251801-113251802(+) m6A CDS       26404942 chr2:113251855-113251856(+) m6A CDS       26404942 chr2:113260549-113260550(+) m6A CDS//exon       24284625 chr2:113260560-113260561(+) m6A CDS//exon       24284625//27773535 chr2:113260586-113260587(+) m6A CDS//exon       24981863//26404942//27773535 chr2:113260591-113260592(+) m6A CDS//exon       24981863//26404942//27773535 chr2:113260637-113260638(+) m6A CDS//exon       24981863//26404942 chr2:113260709-113260710(+) m6A CDS//exon       26404942 chr2:113280084-113280085(+) m6A exon//intron       24981863 chr2:113286272-113286273(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr2:113286292-113286293(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:113286342-113286343(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:113286587-113286588(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr2:113286597-113286598(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr2:113286671-113286672(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:113286748-113286749(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:113289003-113289004(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:113289028-113289029(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:113289150-113289151(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:113289164-113289165(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:113289171-113289172(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:113289198-113289199(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:113289218-113289219(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:113289287-113289288(+) m6A 3'UTR//exon       24284625 chr2:113289452-113289453(+) m6A 3'UTR//exon       24981863//22608085 chr2:113289523-113289524(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr2:113289547-113289548(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr2:113289564-113289565(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr2:113289673-113289674(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr2:113289803-113289804(+) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085 chr2:113289883-113289884(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr2:113289955-113289956(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr2:113292403-113292404(+) m6A 3'UTR       - chr2:113292425-113292426(+) m6A 3'UTR       - chr2:113292473-113292474(+) m6A 3'UTR       - chr2:113292482-113292483(+) m6A 3'UTR       - chr2:113292696-113292697(+) m6A 3'UTR       27773535 chr2:113295909-113295910(+) m6A 3'UTR       24981863 chr2:113295964-113295965(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TTL	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: TTL

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg