Basic Information:

  VIRBase ID:  

VHID00497279

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          TLCD4:  NM_001199679     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	TLCD4
miRBase Accession/Entrez ID	MIMAT0015218	148534
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TMEM56

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TLCD4	chr1:95657619(+) A-I      3'UTR chr1:95657666(+) A-I      3'UTR chr1:95657665(+) A-I      3'UTR chr1:95657668(+) A-I      3'UTR chr1:95657642(+) A-I      3'UTR chr1:95657674(+) A-I      3'UTR chr1:95657675(+) A-I      3'UTR chr1:95657676(+) A-I      3'UTR chr1:95576783(+) A-I      intronic chr1:95576784(+) A-I      intronic chr1:95570067(+) A-I      intronic chr1:95565541(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TLCD4	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: TLCD4

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg