Basic Information:

  VIRBase ID:  

VHID00497229

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          VSTM2L:  NM_080607     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	VSTM2L
miRBase Accession/Entrez ID	MIMAT0015218	128434
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf102//dJ1118M15.2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VSTM2L	chr20:36554877(+) A-I      intronic chr20:36554865(+) A-I      intronic chr20:36539511(+) A-I      intronic chr20:36554630(+) A-I      intronic chr20:36570677(+) A-I      intronic chr20:36554629(+) A-I      intronic chr20:36555432(+) A-I      intronic chr20:36552457(+) A-I      intronic chr20:36571720(+) A-I      intronic chr20:36565427(+) A-I      intronic chr20:36550314(+) A-I      intronic chr20:36555389(+) A-I      intronic chr20:36570833(+) A-I      intronic chr20:36570629(+) A-I      intronic chr20:36570834(+) A-I      intronic chr20:36571555(+) A-I      intronic chr20:36554956(+) A-I      intronic chr20:36554822(+) A-I      intronic chr20:36571537(+) A-I      intronic chr20:36571499(+) A-I      intronic chr20:36537074(+) A-I      intronic chr20:36570773(+) A-I      intronic chr20:36539090(+) A-I      intronic chr20:36554835(+) A-I      intronic chr20:36571552(+) A-I      intronic chr20:36554900(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	VSTM2L	chr20:36561415(+) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VSTM2L	chr20:36572632-36572633(+) m6A CDS       24981863 chr20:36572655-36572656(+) m6A 3'UTR//CDS       24981863 chr20:36572718-36572719(+) m6A 3'UTR       24981863 chr20:36572728-36572729(+) m6A 3'UTR       24981863 chr20:36572846-36572847(+) m6A 3'UTR       25456834//24981863 chr20:36572908-36572909(+) m6A 3'UTR       25456834//24981863 chr20:36572922-36572923(+) m6A 3'UTR       25456834//24981863 chr20:36573065-36573066(+) m6A 3'UTR       25456834//24981863 chr20:36573079-36573080(+) m6A 3'UTR       25456834//24981863 chr20:36573103-36573104(+) m6A 3'UTR       25456834//24981863 chr20:36573123-36573124(+) m6A 3'UTR       25456834//24981863 chr20:36573147-36573148(+) m6A 3'UTR       25456834//24981863 chr20:36573156-36573157(+) m6A 3'UTR       25456834//24981863 chr20:36573216-36573217(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VSTM2L	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: VSTM2L

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg