Basic Information:

  VIRBase ID:  

VHID00497228

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          C1orf162:  NM_001300835     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	C1orf162
miRBase Accession/Entrez ID	MIMAT0015218	128346
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C1orf162	chr1:112020654-112020655(+) m6A CDS//exon       - chr1:112020689-112020690(+) m6A CDS//exon       - chr1:112020701-112020702(+) m6A CDS//exon       - chr1:112020740-112020741(+) m6A CDS//exon       - chr1:112020832-112020833(+) m6A 3'UTR//exon       - chr1:112020849-112020850(+) m6A 3'UTR//exon       - chr1:112020905-112020906(+) m6A 3'UTR//exon       - chr1:112020960-112020961(+) m6A 3'UTR//exon       - chr1:112020992-112020993(+) m6A 3'UTR//exon       - chr1:112021006-112021007(+) m6A 3'UTR//exon       - chr1:112021093-112021094(+) m6A 3'UTR//exon       - chr1:112021124-112021125(+) m6A 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C1orf162	Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: C1orf162

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg