Basic Information:

  VIRBase ID:  

VHID00497214

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          FBXO27:  NM_178820     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	FBXO27
miRBase Accession/Entrez ID	MIMAT0015218	126433
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FBG5//Fbx27

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FBXO27	chr19:39518404(-) A-I      intronic chr19:39518420(-) A-I      intronic chr19:39515018(-) A-I      3'UTR chr19:39515268(-) A-I      3'UTR chr19:39515437(-) A-I      3'UTR chr19:39519587(-) A-I      intronic chr19:39517384(-) A-I      intronic chr19:39519801(-) A-I      intronic chr19:39518381(-) A-I      intronic chr19:39518429(-) A-I      intronic chr19:39516437(-) A-I      intronic chr19:39519807(-) A-I      intronic chr19:39514996(-) A-I      3'UTR chr19:39516483(-) A-I      intronic chr19:39515365(-) A-I      3'UTR chr19:39515060(-) A-I      3'UTR chr19:39518743(-) A-I      intronic chr19:39518373(-) A-I      intronic chr19:39515301(-) A-I      3'UTR chr19:39516617(-) A-I      intronic chr19:39515144(-) A-I      3'UTR chr19:39517229(-) A-I      intronic chr19:39517251(-) A-I      intronic chr19:39515176(-) A-I      3'UTR chr19:39515291(-) A-I      3'UTR chr19:39515015(-) A-I      3'UTR chr19:39515002(-) A-I      3'UTR chr19:39518400(-) A-I      intronic chr19:39515064(-) A-I      3'UTR chr19:39517234(-) A-I      intronic chr19:39518427(-) A-I      intronic chr19:39521381(-) A-I      intronic chr19:39515274(-) A-I      3'UTR chr19:39521286(-) A-I      intronic chr19:39514927(-) A-I      3'UTR chr19:39520570(-) A-I      intronic chr19:39518832(-) A-I      intronic chr19:39517252(-) A-I      intronic chr19:39521340(-) A-I      intronic chr19:39516546(-) A-I      intronic chr19:39521345(-) A-I      intronic chr19:39517200(-) A-I      intronic chr19:39521410(-) A-I      intronic chr19:39521407(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FBXO27	chr19:39515595-39515596(-) m6A 3'UTR//intron       27773535 chr19:39515637-39515638(-) m6A 3'UTR//intron       27773535 chr19:39515725-39515726(-) m6A 3'UTR//intron       27773535 chr19:39515802-39515803(-) m6A 3'UTR//intron       27773535 chr19:39515883-39515884(-) m6A 3'UTR//intron       27773535 chr19:39515983-39515984(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085 chr19:39515996-39515997(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085 chr19:39516026-39516027(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085 chr19:39516126-39516127(-) m6A CDS//exon//intron       27773535 chr19:39516140-39516141(-) m6A CDS//exon//intron       27773535 chr19:39521709-39521710(-) m6A CDS//exon       27773535 chr19:39521737-39521738(-) m6A CDS//exon       27773535 chr19:39521897-39521898(-) m6A CDS//exon       24981863 chr19:39521902-39521903(-) m6A CDS//exon       24981863 chr19:39521989-39521990(-) m6A exon//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FBXO27	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: FBXO27

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg